BtaINT0050312 @ bosTau6
Intron Retention
Gene
ENSBTAG00000013078 | DNAH11
Description
dynein, axonemal, heavy chain 11 [Source:HGNC Symbol;Acc:HGNC:2942]
Coordinates
chr4:30794523-30795923:+
Coord C1 exon
chr4:30794523-30794663
Coord A exon
chr4:30794664-30795610
Coord C2 exon
chr4:30795611-30795923
Length
947 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
3' ss Seq
AACCCGTGTCTCTCCTGCAGGAG
3' ss Score
11.14
Exon sequences
Seq C1 exon
CGATCATGCAGACCACAGCTCGAAAGAACGAGTGGCCACTGGACAAAACGTGCCTGACTGTTGACGTTACCAAAAAAACAAAGGAGGACTACGGGCATCCCCCTAGGGAAGGCGCTTACCTCCACGGGCTCCTCATGGAAG
Seq A exon
GTAAGATGCCCCCAGGAGCACATGCAGGGTTATCACACTTAGAACCTTTCTCACTTGGGTGCAAGTTGGTATTTGTCCTTTGCTTATTAAGCCTGGTGGGCTACAGCCCAGGGGCTCAGTCGGACACAACTGAGCAACTAACACACTACTCCATTTCTCACTCACACTAGTGCTTACTTACCTCACTTCTGGCTTTCAGATAATTTAAATGGTAGGATGTGTGTCCAGTGGGAGCCAAATCTGAAGGTAAGGATTGCGATTGCTTATAGACTTATATTAAATCTACTTCTTATGAATCTGGGGGACGGGGTAGAAGACGGAACATTTTCCACTCACCCACGCATTCATCTTATCTTGTAAACATTTCCTCTTCTCCTGAAAGGCTCTTGGAGAAAGCATTTCCAAGTCTCTGCCAAGATGCTCCTTATCACTTTACAGACCCGAACTTGAATTAAGAAGGTGCAGTAGGAAGGGAACGTGGTGAACTGCAGATTTCTTACACTGTCCACAAGCATACAGATTCACCATTTTTTAAAAGGAAGGACAAACTAACTTGCTTTATTGGGTCTGGATTCTCACAGAACCTGTTTTCATGTAAGTTTTACAAACCTTTTGAATTCAAATGATTTAGTTTTGTTCACAGGAAAGTTCGGGGGTAGCTCGGGAGCATGAGCCTATGCTTTTGAGGAGGGAATGGCAGCCCACTCCAGGATCCTTGCCTGGAAGATCCATGGACTGAGGAGCCGAGTGGGCTACAGTCCATGGGTTGCAAAAAGAGTCGGTCACGACAACAAATCTCTGCTTACAGTGTCTGCGTGGCTCCCAGTCACCAGGTGATGAACCCTCCTCCCATCTTGCCAAGGAAGCCACTGACACGCAGCAAAGTGACAAAACCAGAACATTTATTGCCTACACCAGCACGCTTGTAACCCGTGTCTCTCCTGCAG
Seq C2 exon
GAGCCAGATGGGACAGCCAGTCAGGAACCATCGTGGAAGCCCGCCTCAAGGAGTTAAGGTCCGCGATGCCAGTCATCTTTGCGAAAGCCATACCAGTGGACAGACAGGAAACCACACACACGTATGAGTGCCCTGTGTACAAAACCAAAAGGAGAGGCCCCCACTACGTCTGGACCTTCAGGCTAAAGAGCAAAGAAAAGGCGGCCAAGTGGGTCCTGGCGGGCGTGGCTCTGCTGCTGGAGGCCTGACGTGGCCCTGAGTCCCCCTGGCTTGGCCGGAACACAAGCAGCGCCTGTCGTTGCTCCTGGGCGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000013078:ENSBTAT00000061103:81
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.042 A=NA C2=0.024
Domain overlap (PFAM):
C1:
PF0302810=Dynein_heavy=FE(6.7=100)
A:
NA
C2:
PF0302810=Dynein_heavy=PD(11.4=96.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGCAGACCACAGCTCGAAAG
R:
CACTTGGCCGCCTTTTCTTTG
Band lengths:
347-1294
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]