BtaINT0050469 @ bosTau6
Intron Retention
Gene
ENSBTAG00000008605 | DNAH2
Description
dynein, axonemal, heavy chain 2 [Source:HGNC Symbol;Acc:HGNC:2948]
Coordinates
chr19:28117544-28119317:+
Coord C1 exon
chr19:28117544-28117743
Coord A exon
chr19:28117744-28119190
Coord C2 exon
chr19:28119191-28119317
Length
1447 bp
Sequences
Splice sites
5' ss Seq
CAGGTCTGG
5' ss Score
5.06
3' ss Seq
CCACCCCCTGCCCCTCCCAGGTA
3' ss Score
9.03
Exon sequences
Seq C1 exon
GCTTACCGCCCCTGCGCCCAGCGGGCCTCTGTGCTGTTCTTCGTGCTCAACGATATGGGCCGCATCGACCCGATGTACCAGTTCTCCCTGGACGCCTACATCAGCCTCTTTATCCTCAGCATCGACAAGAGCCATCGCAGCAACAAGCTGGAGGACCGCATCGACTACCTGAACGAGTACCACACCTACGCTGTCTACAG
Seq A exon
GTCTGGGCGCCTCACCGCGTCCCGCACGCGCCCGGTGTGAGGCCCAGTGGCTCTGTGCCCACCATCCCCTCTGGTTTTGTGCTTTGGAGCTGCCCCTGCCACCGCCCCTGGTCCCCTGCTCTTCTCACCATACACCTCCCCTGGACAGTGTCCACCCTTTGGCTGACCATCACCATGGGCTGACCAGTCCCAGTCCCAGTGTCTCCCTTGAGCATTAAGCCTTGTGTGGAGGACCTACCCCTGTGCCAGCACTTCTCAAAAGGTTAATGTGTCCACGACGCAGGTTAATGTAGACTCCGACTCAGTAGGTCTGGGCTGGGACCTGGGAACCTGCATTTCTAACAAGCTCCCAGGTGAAGCTGCTGCTCGTGGTCTGTGGCTCTGACTTTGAGTAGTGAGGTTCCTAACCCCCCGCCTGGACATCCCACAGACCCCTCAAGGTCAACCTGTTTCACGTCCAACTCGTCTCCCCTCTTTCTTCAGGGGCTGCACCCCTGAGTGGCACCAACAGCCACCTCCCAGGCACCTGAACTGGGAGAGATTCCTGGCTCTTCACTGCCCTTCACCTCGCAGATCAGTCCACAGGTTTTGCTCATGATTCTTTCTGCACACCGTTCCCCCTTCCCACCCAAGTCTGTCCACTGCCATGACTCACTTCAATTGAAGTCACCGTGATCTTTCTTTCTGAATTCCCCCGCGGGTTCCCAACAGGTCCTTCTGCCTCCAGCTCTGTCCCTCTCCAATCTGTCCTGCGGTCAGCAACGTGAGCCTTTCAAACACACGAATCTGGCCGTGCCACCCCAGCCCCAGCTTCCATTCTGTGGTGGTAGTTTTGTGTCCAATAGCCATAAAGTCCTCCATACCTTGGCTGCCACCTGCCCTGCAGCCTCACCTTCCCCCTCCTTACACTGGACCCTGAGCATCGCTGAAGCCCTGCACACCATGGTTTTCTCACCACCACTGCCTCCTTGGCCTGTATCTGAGCTCTCCCTGGCATCCTCCCCTCTCCTCTCTGCCACATCACGGTAACTCTGCTGCACCTCCGGCTCCGCTCCAGGCAGGAGAGTGCTGCCACTCATGTATAGGATTCATCTTGTCACACGGTAACCTCTCATGTCCTCTCATATGGTCCCTCATTTGTCCTCCCCACTCTGCCTGACTTCCTCCAGGACAGCAGGACAGAGACTGTATTCATTCACCTTTGTGTCTTCAGGACCTGGCAGTGTACCTGGCACATAGCCGGGGTCCAGTCAGTGTTGAGGAAATTCTGGGAGAACCACATCCTCTCTCTAGAGCCCTAAAGGCTAGGCTGTTTACAGGAGGTTTGGATTAGAGGTTGATGAAGGTCCTCCCTATAGGCAGGGCTCTGTGATTGTCGGGTCTTCACTCAGGAAGCCTCGATGCTGAGTATCGTGCCTCCCAAACCCCCACCCCCTGCCCCTCCCAG
Seq C2 exon
GTACACCTGCCGCACGCTTTTCGAGCGCCACAAGCTGCTATTCAGTTTTCAGATGTGTGCCAAAATTCTGGAGACTTCTGGGAAACTCAACATGGATGAATACAACTTCTTTCTACGCGGGGGCGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000008605:ENSBTAT00000006277:71
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGGGCCTCTGTGCTGTTCTT
R:
CCCCCGCGTAGAAAGAAGTTG
Band lengths:
302-1749
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development