BtaINT0050619 @ bosTau6
Intron Retention
Gene
ENSBTAG00000021972 | DNAH5
Description
dynein, axonemal, heavy chain 5 [Source:HGNC Symbol;Acc:HGNC:2950]
Coordinates
chr20:59540330-59544082:+
Coord C1 exon
chr20:59540330-59540542
Coord A exon
chr20:59540543-59543929
Coord C2 exon
chr20:59543930-59544082
Length
3387 bp
Sequences
Splice sites
5' ss Seq
AAAGTATGT
5' ss Score
6.93
3' ss Seq
TTTTCATGCTTGCATTTCAGGCA
3' ss Score
9.4
Exon sequences
Seq C1 exon
GTGAAGGAGAGGCTGCAGATGATGGGGCCATTCCAGCCAATGAACATTTTCCTCAGACAGGAGATAGACAGGATGCAGAGGGTACTCACCCTGGTCCGAAGCACCCTGACCGAGCTGAAACTTGCCATTGATGGCACCATCATCATGAGTGAAAATCTACGAGATGCTCTGAATTGCATGTTTGATGCCAGGATTCCTGCTCGTTGGAAGAAA
Seq A exon
GTATGTTTAAGTCAGCTCTTATCCTGCCTAATCACTTTATTGTTGTGAATAATTGTAATTGGCAAGTGAAAGCATGTACAGATAATGTGCTTAAGAGTGTTCTTTTGCTTAGGGACTAATCCTCTTAGAGCCCTGTATTTTTAGATTGTAGGTAGGGAAGAAAACGATTTAGCGTCTCCCACATCTCAGGTTCTCTACTAGGCAATTTGTATGCACTGTTTCATGTAAATCTTACAAATTATTACCCATATTTTACTGATGAGGAACTTAGGTTAGGGGAGATTAAATGTTTTCCCAGATCTGTGATGTTAGTTTTATAGAAGGGGATGTTCCTAGACTCACACACACATGTCAAAAGTCACTCCAAAGAGAAATTGTCTCCCTTGCTTTTTCTGTAAATATGTGACTATATATCTCTCAAGGTAGCAAGATAATAATTTAACAGTATTCTTACTGATTGCATATTATTAATTGTGCTAAATGACAGATGTGGGCTTTTAAAAATGTTTTAATGTAAATATAGTTGATTTAACACAATGCTGTGTTAATTTCTGCTGTACAGCAAGGTGGCTCAGTTATATATGTGTATTCCGTTTTGTGTTTCCATTACGGCCCATCACAGGATGCTGAATCTAGTTCCCTGTGCTGTACAGTTGCACCTTGTTCTTCATCCACTTTACATATAATAGTTTGATCTGCTAATCTCAGTCTCCCAATCCTTTCCTCCCCGACCTCCTTCCTTGGCAGCTACAATTTCTTTTCTCTGTGTCTGTGAGTCTGTTTTTCTCTTTCTTAGATGTGTTCATTCATCATATTTTAGATCACACACATAAGTGGTAGCGTATGGTATTTGTTTTTGTCTTTCTGACTTACTTCATTTAGTGTGATAATCTCCAGGTCCAACCGTGATGCCGCAAATGGCATTATTTCATTCTTCTTACTTTATTCTCATTTTTGAAGCTTTTAATTTTGTATTGGAGAATAGCCAGTTGACAATGTTGTGGTAGTTTCAGATGAACAGCAAAGGGACTCAGACATGCAAATACATGTATCCATTCTCCCGCAAACTCCCCTCCCCTCCAGGCTGAGTAATATTCCGTTTTGTATGGAATATGTATGTATGTATATATACACCAGGATGTGGGTTTTTAAAAAATTTCTTTTCCATCATGGTTTGCCACAGGATGCTGAATGTAGTTCCTGAACAGGGCCTTATACAGTAGGGCCCTGTTGCTTACCCATTCTGCATGTAATAGTACGATAAATAGATGTGGTTTGAAGAGATGTTTTTCTACTTGGAGAAGTAAAATGAGAACCTGAGTGTCCTTGTTGAGGAGTTGGCTGATCATGGAACTGAGGGTGCTGAGTGTGCGGTGGGAGGACGCGGGAGACGGCAAGGTGGGGGTTATCCAAGGTGGGCAACTTACAGAGATGAGATTGGGTCCTGGGTGAGTGGAACTTTTGGAGCTGAGTCAGGTAAATGAGATGGTGGGACAGGATGGGGCTAGAACTAATAATCTCTCAGGAGAGACTCCTTTAGTGCTGAGCCTCTGATCCCTCATCCAGGGCTTTGGCAGATTCCAAGGCAGTGGGACAGAAAGCAGTGTATGGTAACTGGGGGTGCTTGTCTACTGTCTTCTCATCTTATTTGATTAACCACCATCCCATCCATCTCTCTGGACACACAGCTTAGAAACTCAGAATCAGCTTTGACCAGATCCCTTTCTCTCCTCCTCTGCAAAAAATTCATTGTCTAGGCCAGAGAGTTTTCTGTATACATTGACTCTGCTCATTGCTAGTGACCTACCTGGTCCCTGGCCATGGCGGGCTCATTCCCCACTAGACCAGCTCACCCAGCTTGGTGAGCACCTGCAGTTCTGGAACAGGGATCCTTGCCAGAAGATACCCCCTCATTAATGGGTCCCTGTGCCTTCAGATCAAATGTTGTATAAAGACATCTCTTTCAGTTAACACACCTATAACGATACGATGGAATGAGTTACCTCATTTTAAACTTTGTTGTTGTTTGGTCACTAAGTTGGGTCTAACTCTTAGAGACCCCATGGACTACAGCATGCCAAGATTCCCTGTCCTTGACCCTCTCCTGGAGTTTGCCCACACTTATGTCTGTTGAGTTGGTCATTCCATCCAACCGTCTCATCCTCTGTCATCCCTGTCTCCTCCTGCCCTCAATCTTTCCCAGCATCAAGGTCTTTTCCAGTGAGTCACCTCTTCGCATCAGGTGGCTAAAGTATTGGAGCTTCAGCTTCAGCATCAGTCCTTCCAACGAATATTCAGGGTTGATTTCCTTTAGGATCAACTGGTTTGAGCTCCTTGCTGTCCAAGGGACTCTAAGAATCTTTAAAAAAAAAAAAATTTGGCCATGCCACACTGGATGTGGGATATTAGTTCCTTGACTAGGGATTAACCCCTGGACTTCCAGGGAAGTCCCACTTCCTGGAACTTAAAATCCTTTTATACAGCATTTTTTTCTACTCAACTTATTAACAGTCTTTGGGAATCCCAGTGTCTCTTGTAAAATAGGCATATCAATTCTCAAGCTATTTGAAATTCAAGTGTTTTATCTATTCAGGTTGATCACTACATTTATTCACACATAAAATAGTGCAGTTCCAGTGAAATGTTATAAAATATGATTTGGAGATACCTTCTAGTGTGACTGCTGATAATGTTGATGACATTTCCATGCCTGTTGTAATAACATAAGTTCCACACGTGAATTCAGGCAGAACGTTACAGGCAGTGAATGCAATTAATGTGTTGGTGGTAAGGAGACCTGTGTTTTCATTTTTATTCCCTTCATCAGAGAATATAAAAAAGCCTTCTAAGAGACAGAAACTTCAGAAAATAAATGTTGTTTGCTCCATAAAAAATAAGTGGAGAAAGGCTTCTACATTTGTCATTCACAGAATATAAAGTGCTGTTAAGGCCATAAGCACATTTACATAAATAGAAATTCTGTTTTATAATGTATCTGTTGAAAATATAGCCTAAGGAAAAAAAATTGAAGCCTGTTAAATTTAATTCAATTAATTGTTTTAATTGCTTTATGACAGAATTGATCATAACTATATTCATATGTGGAAGGAGATTTTATTGATAGCAGATGTCTTGAACAGCATGCCAAGCTGGGTTAATCTGGAATTCACATGAAGATTAGTTGATTCTAACATACTTCATATTATTAAAAAGGAAGAATAATTTGACATCTTAAATGTCAGAACCCTATGGAAATTTATGCCTTAGGGACTTCTAAATTCTAAATGTGAAATTGATATTTCATCTTTTTTTTTTTCCTGTGGATATAGTCAGTTACACAGTAGAATTAAACCTGTATTTATTCATGTTTTCATGCTTGCATTTCAG
Seq C2 exon
GCATCTTGGGTTTCAAGTACCTTGGGTTTCTGGTTTACTGAACTTATTGAAAGAAACTGCCAGTTTACCTCTTGGGTTTTCAATGACCGACCTCACTGCTTCTGGATGACGGGCTTTTTTAACCCTCAAGGATTTTTAACTGCAATGCGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000021972:ENSBTAT00000061278:76
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0302810=Dynein_heavy=FE(10.1=100)
A:
NA
C2:
PF0302810=Dynein_heavy=FE(7.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]