BtaINT0050727 @ bosTau6
Intron Retention
Gene
ENSBTAG00000014063 | DNAH8
Description
dynein, axonemal, heavy chain 8 [Source:HGNC Symbol;Acc:HGNC:2952]
Coordinates
chr23:12689140-12695354:+
Coord C1 exon
chr23:12689140-12689327
Coord A exon
chr23:12689328-12695267
Coord C2 exon
chr23:12695268-12695354
Length
5940 bp
Sequences
Splice sites
5' ss Seq
ATGGTGAGA
5' ss Score
7.23
3' ss Seq
TAAATAATTTTAACTTTTAGAAC
3' ss Score
8.12
Exon sequences
Seq C1 exon
GTCTTGCACAGTCAGGTTCCTGGGGGTGTTTTGATGAGTTTAACAGAATTGAATTGCCTGTGTTATCAGTGGCAGCCCAACAAATTTACATCGTCTTGACAGCAAGAAAAGAGAGAAAAAAACAGTTTATTTTTTCTGATGGTGATTGTGTTGATTTAAATCCAGAATTTGGAATCTTCTTAACAATG
Seq A exon
GTGAGAACATAGGTGTTACATATTTTAAAACTTTTTATTGAGTATGGTTAATATATAGTGTATTAGTTTCTGGTGTACAGGAAAGTGACTCTGTTATATATGTGTATATATATATATATATATATATATATATATATATTATATTCTTTTCTACTATAGGTTATTATAAGGTTTTGAATACAGTTCCCTGTGATATATATACTAGGATCTGGTTGTTTATCTATGTATATATAGTACTTTGTATCTGCTAACCCCAAATTCCTAATTTGTTCCTCCTCCACCCACTTTCCCCTTTGGTAATCCTAAATTGGTTTTCTTTGTCATTTGTATCATAGTTTAGATTCTGCCTTTGAGTGATATCCTATGATATTTCTCTTTGTCTGACTTACTTCACTTAGTATGATGATGTCTAGGTCCATCATGTTGCTGCAAGTGGCGTTGTTTCATTCTTTTCACCCTCTTGATCGGGTGTATTCCTAAGTATTTCATACTTTTTGATGTGATTTTAAAAGAGATTGAAAAACATAGGTTTTAAATGCAATTTATTGGTGTAATTGTTATAGACTTAAATAAAAGTAGGCATATGTGAGTGGGTAAATGACATCTAGGGATCGTCCCTGTTTAAATGATTTTTTTTTTTTTTTTTTTGCGTAGGAAAAATAGACTAGACAGAAGATAAAATAGTGATTTGTTAATGATAAAATTAGTCACTGTTTACTGAGCACTCATTTTGGGGAAAGGTAATGGGCCTTTTATATATTGTATCAGACAGGGAAGCTACAATAACAATGCCCAAATTCTAGTGGCTTACCACCTCAAACCCAGTCCGGTGGCTAAGACTCTGTGCTCCCACTGCAAGGGTTGTGCAGGTTTGATCCCTGGCTGGGGAAACTAAGATCCCACATGCCGTGAAGCATGGCTGGGAAAGAAAATATCCACCATGCAAAATACTACAGGACTATGTCTCCCTGACCCTTAAAGTTAGGTGTGGCCACGTAAATTGCTCTACTTAATACCTTAACTGGAGAAGGCAATGGCACCCCACTCCAGTACTCTTGCCTGGAAAATCCATGGACAGAGGAGCCTGGTAGGCTGCAGTCCATGGAGTTGATAAGAGTCGGACACGACTGAGCGACTTCACTTTCACTTTTCACTTTCCTGCATTGGAGAAGGAAATGGCAACCCACTTCAGTGTTCTTGCCTGGAGAATCCCAGGGATGGGGGAGCCTGGTGGGCTGCCGTCTATGGGGTCACACAGAGTCAGACACGACTGAAGCGACTTAGCAGCAGCAGCAGCAGCAGCAACACCTTAACACACCAGGGAAGCCTGGCGTGCTGCAGTCCATGGGATTGCAAAGGGTCAGATGCGACTGATGGACTGAACTGACTGAACTGAACACATCAAAGATTTATTATTTTCATACCACACGTCCACTTGGGTGTATGGTGTCGTGGTGGAGAGGGCAGAAGATGCTTTACATGTCCTGTCTCTGGTACTGTCTCAGCTGTGACTGGTAGCTACAGCAAAGGAAAAAGAGAACAAGAAGAATTATGCTCTGGTTCTTAGGGTTTCCTGTCCAGAAGTGAGACTAGTCACAAACTTTGGCTAAAGCAAACAACCAGTAAAGCAATTAGGGGTAAATAATAATAATTCTGAAGTGATCAGTTATAACCCATGAAACTGAATGAAAGAGTTTACTCAGTGTGATAGTGTGGCTTAGAAGAATTTAAAAGAAGCAAACAAAAGCCCAGGTCCAGACGGCTTCACAGCTGAATTCTACCAAAAATTTAGAGAAGAGCTAACACCTATCCTACTCAAACTCTTCCAGAAAATTGCAGAGGAAGGTAAACTTCCAAACTCATTCTATGAGGCCACCATCACCATAATACCAAAAACCTGACAAAGATGCCACACACAAAAAAGAAAACTACAGGCCAATATCACTGATGAACATAGATGCAAAAATCCTTTAAAAAATTCTAGCAATCGGAATCCAACAACACATTAAAAAGATCATACACCATGATCAAGTGGGCTTTATCCCAGGGATGCAAGGATTCTTCAATATCTGCAAATCATTAATGTAATACACTACATTAACAAATTGAAAAATAAAAGCCATATGATTATCTCAATAGATGCAGAGAAAGCCTTTGACAAGATTCAACATCCATTTATGATAAAAACTCTCCAGAAAGCAGGAATAGAAGGAACATACCTCAACACAATAAAAGCTATATATGACAAACCCACAGCAAACATTATCCTCAATGGTGAAAAATTAAAAGCATTTCCTCTAAAGTCAGGAACAAGACAAGAGTGCCCACTCTCACCACTGTTATTCAACATAGTTTTGGAAGTTTTGGCCACAGCAATCAGAGCAGAAAAAGAAATAAAAGGAATCCAGATTGGAAAAGAAGAAGTAAAACAACTGTTTGCAGATGACATTATCCTCTACATAGAAAACCCTAAAGACTGCACCAGAAAATTACTAGAGCTAATCAATGAATATAGTAAAGTTGCAGGATATAAAATCAACACACAGAAATCCCTTGCATTCCTATACACTAATAAAGAGAAAATAGAAAGAGAAATTAAGGAAACAATTCCATTCACCATTGCAATGAAAAGAATAAAATACTTAGGAATATATCTACCTAAAAAAACTAAAGACCTATATATAGAAGACTATAAAACACTGGTGAAAGAAATCAAAGAGGACACTAATAGATGGAGAAACATACCATGCTCATGGATTGGAAGAATCAATATAGTGAAAATGAGTATACTACCCAAAGCAATCTACAGATTCAATGCAATCCTTATCAAGCTACCAATGGTATTTTTCACAGAGCTAGAACAAATAATTTCACAATATGTATGGAAATACAAAAAACCTTGAATACCCAAGCAATCTTGAGAAAGAAGAATGGAACTGGAGGAATCAACCTGCCTGACTTCAGGCTCTACTGCAAAGCCACAGTCATCAAGACAGTATGGTACTGGCACAAAGACAGAAATAGATCAATGGAACAAAATAGAAAGCTCAGAGATAAATCCACGCACCTATGGACACCTTATCTTTGACAAAGGAGGCAAGAACATACAATAGAGAAAAGACAATCTCTTTAACAAGTGGTGCTGGGAAAACTGGTCAACCACTTGTAAAAGAATGGAACTAGAATACTTTCTAACACCATACACAAAAATAAACTCAAAATGGATTAAAGATCTAAACGTAAGACCAGAAACTATAAAACTCATAGAGGAGAACATAGGCAAAACACTCTCTGACATTAATCACAGCAGGATCCTCTATGACCCACCTCCCAGAATATTGGAAATAAAAGCAAAAATAAACAAATGGGACCTAATTAAAATTAAAAGCTTCTGCACAACAAAGGAAACTATAAGCAAGGTGAAAAGACAGCCTTCAGAATGGGAGAAAATAATAGCAAATGAAGCAACTGACAAACAACTAATCTCAAAAATATATAAGCAACTCCTGCAGCTCAATTCCAGAAAAATAAATGACCCAATCAAAAAATGGGCCAAAGAACTAAATAGACATTTCTCCAAAGAAGACATATAGATGGCTAACAAACACATGAAAAGATGCTCAGCATCAGTCATTATCAGAGAAATGCAAATCAAAACCACAATGAGGTACCATTTCATGCCAGTCAGAATGGCTGCGATCCAAAAGTCTACAAGCAATAAATGCTGGAGAGGGTGTGGAGAAAAGGGAACCCTCTTACACTGTTGGTGGGAATGCAAACTAGTACAGCCACTATGGAGAACAGTGTGGAGATTCCTTAAAAAACTGGAAATAGAACTGCCTTATGATCCAGCAATCCCACTGCTGGGCATACACACTGAGGAAACCAGAATTGGAAGAGACATGTGTACCCCCAATGTTCATTGCAGCACTGTTTATAATAGCCAGGACATGGAAGCAATCTAGATGTCCATCAGCAGATGAATGGATAAGAAAGCTGTGGTACATATACACAATGGAATATTACACAGCCCTCAAAAAGAATACATTTGAATCAGTTCTAATGAGGTGGATGAAACTGGAGCCTATTATACAGAGTGAAGTAAGCCAGAAAGAAAAACACCAATACAGTATACTAATGCATATATATGGAATTTAGAAAGATGGTAATGATAACCCTGTATGTGAGACAGCAAAAGAGACACAGATGTATAGAACAGTCTTTTGGACTCTGTGGGAGAGGGAGAGGGTGGGATGATTTGGGAGAATGGCATTGAAACATGTACAATATCATATAAGAAATGAATCACCAGACCAGGTTCGTTGCAGAATACAGGATGCTTGGGGCTGGTGCACTGGGATGACCCAGAGGGATGGTACGGGGAGGGAGGTGGGAGGGGGGTTCAGGATGGAGAACACGTGTACACCCGTGGCAGATTCATGTTGATGTATGACAAAACCAATACAATATTGTAAAGTAATTAGCCTCCAATTAAAATAAATAAATTTAAATTAAAAAAAAAGAAGCTTGCCCTTGGATTAAGAATAATTTTGGAAATATCAATTAGATATTGCATTAGGCTGTGAATACCTGAGATATGAAGAATAGTAACTTAAGTATGTATTCTTTTAAGATTCTTTGAGGTTTCTACACCATCATGGTTTCCATTTTCAAGGTCACCTTATAGCCCAAGGTGCTACAGAAGCAGCTCTGTTGCAGCCAATTGACTGAATCAACTCCCTTCAGTCAGACATCAAATGTATTTCATACACTGTCCCTTTCATACACTGTGTCCCTTTGTGACTCACAGGGTAGAATTTAATCTCACCAGCTGCAGGGCAGGCTGGGAAATGTAGTTTTAAATCTGGGTGGTGATGCACCCAGCTTGCAGCTGAAGTTATGTGACTAAGAATGAAAAATAGGAGTATTGAAAGGCAGCCAGCCATCTTTGCGTCCCCAGCACCTGGAAAGTTATCTGGTCTATTGACCATGCCCAGTAAATGCTCAGGGACTGAAGGTTTCCTCATGCACTTTCCTCTTTGCCTTACTTGTCTTCGAACACCCTCACCTTATCGCTTGGGATTTTTGGGTGTGGTCTATCCTCAGTCTTTTGCTACTTATTAGCTTCCTTCTCACCTCTACTTTTGTCCTTTTTAATGTTTTTCTCATCATTCCTGTCTTTGTTTCCCTTCATCACTGTGTGTGTTTTTTTAAATAGTAAAAAGAAACTATTTGTCAGCTATTTATGGCTATTTGTCAGCCACAGAACTCTCTAATTCTGACTGTAAAGAATAATTTGTGTTGTTGATCAGCAGAAACCAACACAATATTGTAAAGCAGTTATCTTCCAATTCAAAAACAAAGCACACACACACACAAAGCAAATAGGAAACATTAATAAAAAAGACAAACCTAGCAACTATAGTATATACTCCATGCAAATGTCCTTCAAAAGGTAAGGCAAGATAAAAATATTTTCTGGCAAAAAAAAGAACAATTGAAGAGAGGAAATAAAAATTGCCTCAGTAAATTGATTAGTATGAAATCCTAAATTTTCTTTTTCTTTAAGTAACACATTTTAGATCATAATTATCCCAGTATTTATTCAGTTTTATTTCATTTTCTTTAACAAATAGATACACAGAGGCTTATTTTTTTGCTACATAAAGTGGTGTATGTGTGTGTACATGTGTACATATGCACATGTGTGTTACTTTATTAGTATAATGAAAATGGAAATGTGTGAGAGAAAGTAATGTGACATTAATAAATATGGATGGTCCAATACATATTTTTGTGAAAAGAGGGATATTTTATGAATCGAATGTTTTTCAATACCTTCTTAGAATCTGAATTAGGGATTTGAAATGTATTGATAATTTGTATTCAAGAAGTGAAAATTATGTCAACAATTAAAAATTAAATAATTTTAACTTTTAG
Seq C2 exon
AACCCTGGGTATGCTGGGCGCCAGGAACTACCTGAGAACTTGAAAATTCAGTTCAGAACTGTTGCTATGATGGTTCCTGATAGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000014063:ENSBTAT00000018689:44
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF127742=AAA_6=FE(26.7=100)
A:
NA
C2:
PF127742=AAA_6=FE(12.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]