BtaINT0050735 @ bosTau6
Intron Retention
Gene
ENSBTAG00000014063 | DNAH8
Description
dynein, axonemal, heavy chain 8 [Source:HGNC Symbol;Acc:HGNC:2952]
Coordinates
chr23:12703131-12705252:+
Coord C1 exon
chr23:12703131-12703271
Coord A exon
chr23:12703272-12705014
Coord C2 exon
chr23:12705015-12705252
Length
1743 bp
Sequences
Splice sites
5' ss Seq
CAAGTAAGA
5' ss Score
7.61
3' ss Seq
TGTATTTTAAATATTTTCAGTCT
3' ss Score
5.67
Exon sequences
Seq C1 exon
GCATGGTTGAAGAAGCGTACTACTCAGGAAAATAATGTATTCCTAACTCTGTATGATAAAATATTTGAGGATGCATATACATTTATGAAACTGAACCTCAATCCGAAAATGCAGCTCTTAGAGTGCAACTATATTGTGCAA
Seq A exon
GTAAGATATGTTTTTTGTACACTCATTGCTTAAGATTTGAAATTCCCCCCACCTCCCCCCCACACACTCAGTTGCAGTCTAGAGGTATCTGAAATGGAAGGTTCACAGAATACATCAAAATCTTTCTGTGATGTGGCAGTGAAGCGTCTGAGAATTTGGATTCCTATTAAAGATCTTATTGATTCACTTACTGCCATGTCTTCATGAGTTTCACCTCCCAGGGCGGTATTGTCAGGGGAAGCGGAATGAACTATCTTTCCCACCATTCAAGCTCAGTCTAACCTTCCCAGAAAGAGTGTCCAAAAATGAGAGCAGACAAGATAAATAGAGCTGGTAGTTCTACAGAAAGCACAACAAGGAGCTGGTGGCAAGCAGGAAAATTTGGGTGGAAGTCTTGGCTTTGCAAATTTAGTGTATGTATTAGATAGGGAAAACCTTGAAGCAGCTCTCCAAGTAGTTTGTAACCTTATATTTTCCCCCTCTACTCAGTTTTCCTTTTAAGTCTTTGGAAGAAACAGAACAAATCGTGAATTTCTTTCTCTTTCTTTTTTTTCTGTTTCTTTTATATATTTTTTTAAAGATGTATTTGTTTAATTGGAGGATAATTACTTTGCAATTTGATGATGGTTTTTGTCATACAGCAATATGAATTGGCCATAGGTATACATGTGTCCCCTCCATCCTGAACCTCCCTCCCATCTCCTTCCCTACCCTATTCCTTAGATTTTTCAAAGGCTCTCCTGATTCTAGTCCATATGTGATCTCTCATTATCCATTCTAGAGCTCTGATTCTCTGTCAGTGTGAAGGACGTCAGTCAGGGAGGCTGGGTGGCTTAGAAATAATTCATGAAGCTCACAAATCATTGAAATGATTTTATTTTGAAAGACAAAGGATGTCTTACTGTAGATACTTTTTTTCTTTTTTTTTTTTTTTTTTGATGCCATGTGGGAGTTGACACACTTTTTCTTGAAGGGGCAAATAGTCAATGTTCTAGGCTTTGCACAATTTTCCATCCCAACCCCTCAGCTCTACTGTTGCAATATAGAAACAGCCAGACGCAATGGACGAGACTAACTGTGTTTCAGAAACACTTCATTTGCTAAGCAAGTGGCTGGCCCCTGGGGCCACAGTGTGCTGAGCCTTGCAACATGTTAAAAATAAATAAAATCTTTGATCTATAAAATTTGGAATAACCAAACTTTAGAACCAGAAACTACCTAAGGAAGCATCTAGTCTAGGCTTTTTGCTGCTCAGATGAGGAAACTGAGACTCAGAGATGTTAGGGGCATGAGTTGGGGGAAGAAACCACACCTCCGCATTCCCAGTTTGGTGTCTTTTCTGTGCAGTCATGCTAAGAGTCGGACACGACTGAGTGACTTCACTTTCACTTTTCACTTTCATGCATTGGAGAAGGAAATGGCAACCCACTGCAGTGTTCTTGCCTGGAGAATCCCAGGGACGGGGGAGCCTGGTGGCCTGCCGTCTATGGGGTCGCACAGAGTCGGACACGACTGAAGCGACTTAGCAGCAGCAGCAGCAGCAGCATGTAGTCTGCCTAAAGCAGAATGACTTTTCTTCTAAATGCCACTGGCTGTAGGACACTGATCAAGCCATAACTGGGGATATATGGATTTGTTTTCTTCTCCCGTTCTCTCCTTCTTTTAAAGTTATTATTATATTTAAATGTTTATTTTAAAATCTAAATATAACACTTACTTTTATTGTATTTTAAATATTTTCAG
Seq C2 exon
TCTCTCAATCTTCTGGAAGGTTTAATCCCCTCCAAAGAAGAAGGTGGCATTTCGTGTGTCGAACATCTTCATAAATTATTTGTGTTTGCTCTAATGTGGAGTTTAGGAGCCCTTCTGGAACTGGAAAGCAGAGACAAGCTTGAAGCTTTTATGAGAAGTCATGAAAGCAAGTTAGATTTACCAGAAATACCTAAAGGCTTGACTCAAACCATGTATGAGTTCTATGTTACTGATTATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000014063:ENSBTAT00000018689:51
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCATGGTTGAAGAAGCGTACT
R:
TGGTTTGAGTCAAGCCTTTAGGT
Band lengths:
352-2095
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]