BtaINT0052415 @ bosTau6
Intron Retention
Gene
ENSBTAG00000047958 | DPP7
Description
Bos taurus dipeptidyl-peptidase 7 (DPP7), mRNA. [Source:RefSeq mRNA;Acc:NM_001105043]
Coordinates
GJ059509.1:6068-6470:-
Coord C1 exon
GJ059509.1:6430-6470
Coord A exon
GJ059509.1:6204-6429
Coord C2 exon
GJ059509.1:6068-6203
Length
226 bp
Sequences
Splice sites
5' ss Seq
CAGGTGCGT
5' ss Score
9.73
3' ss Seq
TAACTCTGCAACCGCACCAGCTA
3' ss Score
0.38
Exon sequences
Seq C1 exon
CTCGAGGCCCCCGATGCCCCGGCCATCGCCTTTGGCGGCAG
Seq A exon
GTGCGTCAGCGTCTCCTTTCTCTCCCCAGCAAGTGTACTTGGCCCCGCCCAAAACTTCTGTGGGTCTTGGACGTGTCGGGTCCTGGGGGGCACAGGGCGGGAGGCCCTGGGAAGGCAGAGGACGTGGGTGTTGGCCACACAGCATGCACGCTGAGAGGCTGCCGAGTCTCCCTTGCAGGCGACGGGGCGCTGGGGGTGCCCCAGGCTAACTCTGCAACCGCACCAG
Seq C2 exon
CTACGGGGGGATGCTCAGCGCCTACCTGAGGATCAAGTACCCACATCTCGTGGCGGGGGCCCTGGCGGCCAGCGCCCCTGTGGTCTCGGCGGCAGGCCTCGGCGACCCCTACCAGTTCTTCCAGGACGTCTCTGCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000047958:ENSBTAT00000064726:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF055777=Peptidase_S28=PU(3.8=85.7)
A:
NA
C2:
PF055777=Peptidase_S28=FE(14.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]