BtaINT0052421 @ bosTau6
Intron Retention
Gene
ENSBTAG00000047958 | DPP7
Description
Bos taurus dipeptidyl-peptidase 7 (DPP7), mRNA. [Source:RefSeq mRNA;Acc:NM_001105043]
Coordinates
GJ059509.1:4253-4610:-
Coord C1 exon
GJ059509.1:4454-4610
Coord A exon
GJ059509.1:4318-4453
Coord C2 exon
GJ059509.1:4253-4317
Length
136 bp
Sequences
Splice sites
5' ss Seq
GCGGTGAGG
5' ss Score
7.93
3' ss Seq
GCTCCCTCCATCTGTTTCAGACC
3' ss Score
9.6
Exon sequences
Seq C1 exon
GCCTGCACTGAGATCAGCCTGACGTTCTCCAGCAACAACGTGTCCGACCTCTTCCCCGAGCTGCCCTTCACTGAAGCCCAGCGCCAGCAGTACTGCCTGGACACGTGGGGCGTGTGGCCACGGCAGGACTGGCTGCAGACCAGCTTTGGGGGGGGCG
Seq A exon
GTGAGGCCCACGGCGGGGGTCGGGGCGCGGTTCCTCCCACCGCACTGAGCAGGCTCCTTCCCAGGCTCCAGGACCCAGCCCCTGGGTCAGGGTGAGGGGGCCCCCAGTCCCACCACGCTCCCTCCATCTGTTTCAG
Seq C2 exon
ACCTCACAGCTGCCAGCAACATCATCTTCTCCAACGGAGACCTGGACCCCTGGGCGCGGGGCGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000047958:ENSBTAT00000064726:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF055777=Peptidase_S28=FE(16.5=100)
A:
NA
C2:
PF055777=Peptidase_S28=FE(6.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGATCAGCCTGACGTTCTCC
R:
CCCAGGGGTCCAGGTCTC
Band lengths:
202-338
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]