BtaINT0052936 @ bosTau6
Intron Retention
Gene
ENSBTAG00000040126 | DSG4
Description
desmoglein 4 [Source:HGNC Symbol;Acc:HGNC:21307]
Coordinates
chr24:26048449-26051606:-
Coord C1 exon
chr24:26051467-26051606
Coord A exon
chr24:26048677-26051466
Coord C2 exon
chr24:26048449-26048676
Length
2790 bp
Sequences
Splice sites
5' ss Seq
ATGGTAAGA
5' ss Score
9.48
3' ss Seq
TATATGTCTTGCTGTTTCAGATG
3' ss Score
10.75
Exon sequences
Seq C1 exon
GTATATCATAGGACATGACGCAGGCAACTGGTTAAAAATAGATTCAAGGACTGGAGAGATACAATTTTCTAGGGAATTTGATAAGAAGTCAAAATATATTACCAATGGGATATACACAGCAGAGATCCTGGCTATAGATG
Seq A exon
GTAAGAAAATTTATTGTCAATTCTTAATAAAATTATTACTAAAACATTCAATACAAGTAATATTCTAATGTTAATACTAGATTGACTCAAATCCAACATACATTTATTAGTGTCTTTAAGACTTATAGAGAGCTCTAAATACCTTAGATCAAGGACTGAGTTCAGTATCCTTATAATCAATCATAATTTACATTTAAGTCATAATTTATTTCACCTATTTACAAAAAAGAATTGTATGTGATTTACAGTGTGAAGCATAAAAGTTAAAATATGTAAATAAAATTCAGTTTCTGCTTTTGACTTCATCTCTTGAGAGAATTGATCAGCTTGTAGAGGATGTTAGAAATGTTTACTTAAGTAAGTGCTACAAAGTGTGCTCAAAATTCACCTGCAGGTAAGGCAGCATCCCGAAGTATATAGTTATTTCAGAACCACTAAAACTGAGCTACAATAAGAGGCCTGTGTGAGTACTGTTGTCCAAAGAAAAATGCTGAAGACCAAGAAAGCACAAGGTTATTCCAAATATAAGATTCAAATTACATTTGTAAGTGCAGATGCACTGAAGTAACTTGTAATTGAGCAGTTCCTCACGTGGGAAAATCTATTAAGCATTCCTCTTGGTGAGCAGCAACAGGAATTTGTTTAGCAACAGTTAATGATTCTCCAGAGCAAAGGCTACTACTGCTATTTCCTAGCAGTAGCTAGGAAACCAGCCACTATGAAACAAAACAGCAGAAAAAGCTCAGTAACCAGGAAAGAAGGGAGAAGATAGATGTCTCAAGTACATACCTAATAGAAGATAGATATTGGAGGATTGCATTAAGTTTATACCCGAGATTTACAGTAGCCAAACAAAGAGAAAGATAAACAGTCAGTATAGGATTGAAAGAGAAACCATGGCAATACCCAAACAATTACATACATTCTAGTCTTCATCCCATGAGTGTCACTTTCAGCATCTGCGTGAGTTATGTAAATATTTATTATCAGTATTCTGAAAATGAATTCTAGCCAGGTTGATCACAGCCAATGGGTCATATGAGAAAATCCAATTCTAGTTCAAAAACTAGAATAAAACATTAGTCAAGTAAATAAAAACAAAACTACATGAAAATGTACCCACAGAAACCTAAAAACGAGGGCCATTGTTTATTCCCCTAAGCCGAGTATCTCCTTAAAAATCTGCTTAAAAATATTCCAGGTTCAATGCAGGATACTGGATGCTTGGGGCTAGTGCACTGGGACGACCCAGAGGGATGGTATGGGGAGGGAGGAGGGAGGAGGGTTCAGGATGGGGAACACATGTATACCTGTGGCGGATTCATTTTGATATTTGGCAAAACTAATACAATTATGTAAAGTTTAAAAATAAAATAAAATTAGAAAAAATAAAAATAAAAAAATAAAAATATTCAGCACAAGCCTTCCAGAGAGCTGGAATACGTTTGCTCAAGGATGCTCGGCCACTAGGTAAAGAAGCAGAGCTCTGCCTAGAGCAGACACGACAAGGAGCAGATGCTGTCGACAGTGGCTTTAGCTGTGGTTTGCCACAGAAAGTGAAAGTCGCTCAGCCGCGTCTGACTCTTTACGACCCCATGGACTATACAGTCCATGGAATTCTTCTGGTCAGAATACTGGAGTGGGTAGCCTTTCCCTTCTCCAGGGGATCTTCCTAACCCAGGGATCGAACCCAGATACCCCGCATTGCAGGCGGAGTCTTTACCAGCTGAGCCACCAGGGAAGCCCACAGCCCAAGGCCATAAGAAAGTTCCAGAGGATGAGAGAACAACACAGCACATAATCTAATCTACGGGATAATCTAGTATCTCTCTAATGAACCTAAGTCTGGAATAGAAAGTCAACTCCCAAATCAGGTATAAGAACACACTGTACAAAACCATATACAGTATGAATAGGCTCCTGGTTTGTTATCATTTGAGTAACTAAATGACTCTTCCATTTAGGCATACAAAAGACATCTTTAAAAGACATTTATTAACTTCACAAAGAGTGACCTAGCAAAATACCTAGAGATGATAGTGTTCTGACTTACAAATGAAAATACTAAGACTCTCTGCAAGTAAAAAACAAAACAATTCTTTATTCAACATAAAGTATAAAAGTGGACTAAAAGCCCAGACTCCTATTTCTTTGTCCTCTGCTCCTTCTAATAATATACTAACCCAAAATTTGTTTCAAATGGGTTAGGAAGAAAGCAAATATATTTATATTTGTTTTCAAAAGTACCGTTTCAGAGAGAAACAGTGTCTATTTAATGGATGGATTTAAACAGTGAAACAGAAAAAAAAAAAAAATACTCAAAACAATTATTTAACTTCAATTGCAGTTATTTCCACAAACACCGGACTCAATAAGTACCCAGAATGAAAGGCTCTAAACTGGACTACAGGGGTCTCATTTGGGGAGATACGGTGGACTAGAAAGCAGTAAGCCTTCTCTGAGAAAGGATGCTGAATTTTGCATTCTGAGATATGTAGCTGAATGAAACAGGAATGAAAAAACATTTTAGGAAGAGTGACTAGAAGGCACAAGTGTTTGGTTTAGGAAAGAACAAGTTCCAAGAACTAAAAAGAAGCCACTGGGTCCGGAAGGTGCTGAGCAAAAGCAAGAGCAGCTTCAGGAGATTTAAGCAGGCAGGATCCTATCACGCACCAGCTCAGGAGTCAGGTCACGCTGTTCCTCTATGCTGTGGCGTCATCATGGGATACGAGAAAGAATTTTCTCCCCAACACCATTTACCCCAACACCCTATATGTCTTGCTGTTTCAG
Seq C2 exon
ATGGCTCTCTAAAAACGGCCACGGGAACCATATGTATTGAAGTTCCTGATGTCAACGATTACTGCCCAGTCATTGTTGCTGAGAGAGAAACCATCTGCATTGCCTCTCCCTCCATCCTTATCTCTGCTGCAGGCGTTAACAGTCACCCTTATGGGTCTCCCTTCACCTTCTGTGTTGTTAATGAACCCCCAGGGACAGCGGACATTTGGGATATCACATCAGTAAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000040126:ENSBTAT00000048414:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0002812=Cadherin=FE(48.0=100)
A:
NA
C2:
PF0002812=Cadherin=PD(15.3=19.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]