BtaINT0052946 @ bosTau6
Intron Retention
Gene
ENSBTAG00000040126 | DSG4
Description
desmoglein 4 [Source:HGNC Symbol;Acc:HGNC:21307]
Coordinates
chr24:26059919-26060489:-
Coord C1 exon
chr24:26060323-26060489
Coord A exon
chr24:26060054-26060322
Coord C2 exon
chr24:26059919-26060053
Length
269 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAAG
5' ss Score
8.27
3' ss Seq
AAATTCTCTTTCATCTTAAGCAA
3' ss Score
4.95
Exon sequences
Seq C1 exon
ACACCCTGGTGGTAAAGTTAAGTGCCACAGACGCAGACGAAGACAATCATCTGAATTCTAAAATTGCCTATAAGATTGTGTCTCAGGAGCCGGCGGGCTCACCGATGTTCATCATGAACAGGTACACTGGAGAAGTGTGCACGACGTCCAACCTCCTCGACAGAGAG
Seq A exon
GTAAAGCCTGCTGTGAATGAACTTTTAAAAATAAGGAATTCAGTTTTGACGAGACAAAGATGAAATGATGCGTGTGTGCCCATGCCTTTTTCGTGTAAAGGAGAAGAGTAAAAAGAGTCCAGCCATTACTTTTCAATGAAAATGATGAAAAGAAAAAAATACTGTATTAAAAGATGACAGAAAATTATAAAAGAAAAATGGAATAATCAGAATGTGTTGGATTGTATTCCAAACAAGGTCAAAGTCTTAAAATTCTCTTTCATCTTAAG
Seq C2 exon
CAACACAGCATGTATAACCTCCTCGTGAGGGGCTCAGATCGGGATGGAGCTACGGATGGACTGTCTTCAGAGTGTGACTGCAGAATCAAGGTTTTAGACGTCAATGATAATTTCCCCACTTTGGAGAAAACTTCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000040126:ENSBTAT00000048414:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.054 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0002812=Cadherin=FE(55.6=100)
A:
NA
C2:
PF0002812=Cadherin=PD(31.3=68.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTGGTGGTAAAGTTAAGTGCCA
R:
CGAAGTTTTCTCCAAAGTGGGG
Band lengths:
298-567
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]