BtaINT0053628 @ bosTau6
Intron Retention
Gene
ENSBTAG00000008449 | DYNC2H1
Description
dynein, cytoplasmic 2, heavy chain 1 [Source:HGNC Symbol;Acc:HGNC:2962]
Coordinates
chr16:29146439-29147209:+
Coord C1 exon
chr16:29146439-29146585
Coord A exon
chr16:29146586-29146978
Coord C2 exon
chr16:29146979-29147209
Length
393 bp
Sequences
Splice sites
5' ss Seq
AAGGTAATC
5' ss Score
7.46
3' ss Seq
AGTATTTATTTATTTTTTAGATT
3' ss Score
7.77
Exon sequences
Seq C1 exon
GGAACAGACCCCACACATGTTGGAGTTCACGTCTTTGGTTTATTCATTGAGGGGGCAAGGTGGAATCACAAAGAAAAAATACTAGAAGACTCGTTACCTTGTGAGATATGTTGTGATTTTCCTGAAATATACTTCTTGCCAACAAAG
Seq A exon
GTAATCTCCCAGATGTTTTCACAAAGTTCTAAACCACTGAGCTTTCCCTCAGTAGTACCAACCATTCCTTCTACTTCCCATCCTTATGATTTCACTAGGGAGATTCGCCAATATACTTCAGACTACAAGCATGTAAAATAGCCCCCAATACTCCTAAAACCTAAAATAGATGCTGTACAAACATCCAGTGTGATTTCTCAAGAATAGGTACTATAAAGCTATACTAGTGACTCTAAAAAATCAGGTATAATTCTATATGCATTTACATAACTGAATAATCACCTAAAGTTAAATGTATTCAATTTATAACAAACTCCCCAAACCTAGTATAAAAGAAATGTGAGCCGCTGGCTTACTTGAACTGTGTAATTTGAGTATTTATTTATTTTTTAG
Seq C2 exon
ATTTCTACTGAAAGATCAACTGTGTCTAAGCAGACAGAGCCAGAACTCTATACTTTTGAATGCCCGGTTTACCAGACACCTGAGAGGTCGAGTATTTTGACAGCTGCTGGTTTATCCTCAAACTTTTTAACATCTGTGTACTTATCCACAAAGAAACCTCCTAGTCACTGGATCACAATGCAGGTTGCACTGCTGTGTGAGGAGAATGAAAAATAAACTTCCTTAACAAAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000008449:ENSBTAT00000011123:40
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.014
Domain overlap (PFAM):
C1:
PF0302810=Dynein_heavy=FE(25.9=100)
A:
NA
C2:
PF0302810=Dynein_heavy=PD(35.7=91.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGACCCCACACATGTTGGAG
R:
TCATTCTCCTCACACAGCAGT
Band lengths:
352-745
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development