BtaINT0061049 @ bosTau6
Intron Retention
Gene
ENSBTAG00000002278 | FBN1
Description
Bos taurus fibrillin 1 (FBN1), mRNA. [Source:RefSeq mRNA;Acc:NM_174053]
Coordinates
chr10:62127434-62127931:+
Coord C1 exon
chr10:62127434-62127550
Coord A exon
chr10:62127551-62127802
Coord C2 exon
chr10:62127803-62127931
Length
252 bp
Sequences
Splice sites
5' ss Seq
TTGGTAAGT
5' ss Score
10.47
3' ss Seq
TCTCCCTCTGCTTCTTACAGATA
3' ss Score
11.05
Exon sequences
Seq C1 exon
ATCTTGATGAGTGTGCAACTAAGCAGCACAACTGCCAGTTCCTGTGTGTTAACACCATTGGCAGCTTCACATGTAAATGTCCTCCTGGATTTACCCAACACCATACTGCCTGCATTG
Seq A exon
GTAAGTGGGAGAGGGAAGGTCCTATGTAGGTATTCGTTGAAGGGTTTGTTTTCAAGGGCTTCTGCTGTTGGAATAAGAAGATAAAACTCAAGAAAATATGTGAATATATGTATATGTATCTGTGTGTACATGCATGCATGTTGTGAAAAGCTATTGGCTTTTTCTGAGCAAATCACCCTTCTTTCTTCCTTTTAAACAACACAGAGAGCTTCGGAAGTCCCACCCTCTCCTTTCTCCCTCTGCTTCTTACAG
Seq C2 exon
ATAACAATGAATGCACCTCTGACATCAACCTGTGTGGGTCAAAGGGCATTTGCCAGAACACTCCTGGAAGCTTCACTTGTGAATGCCAGCGGGGATTCTCACTTGATCCGAGCGGCGCAAGCTGTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000002278:ENSBTAT00000002944:60
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0764510=EGF_CA=WD(100=95.0)
A:
NA
C2:
PF126622=cEGF=PU(83.3=45.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTTGATGAGTGTGCAACTAAGCA
R:
CTTCACAGCTTGCGCCGC
Band lengths:
245-497
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development