BtaINT0061137 @ bosTau6
Intron Retention
Gene
ENSBTAG00000015307 | FBN2
Description
fibrillin 2 [Source:HGNC Symbol;Acc:HGNC:3604]
Coordinates
chr7:26893864-26894358:+
Coord C1 exon
chr7:26893864-26893929
Coord A exon
chr7:26893930-26894232
Coord C2 exon
chr7:26894233-26894358
Length
303 bp
Sequences
Splice sites
5' ss Seq
AAGGTGTGG
5' ss Score
5.28
3' ss Seq
TGGATGATTTTGTATTTTAGATG
3' ss Score
8.2
Exon sequences
Seq C1 exon
TGGCATTCCAGGATTTGTGTCCCTATGGCCACGGAACTGTTCCTAGTCTTCATGATACCCGTGAAG
Seq A exon
GTGTGGTTTAATATATTTTATTTTCGTAGTCTCATGTAAATACAATATTGTACATTTGTTTTATAATCATGCTGTTTTTACTGTATAACATATATTGTATTGCATTTAATGCACATATATGATATTTATAGTGTATCATATGCACTACATCATAAGACTATGTTGCAGCATATGAAATACACGTTTCTCTGATAAAAGAAATGCTCATATGTTTTAACACTTTTAAGCCTCTTTTGAATAGATACATGCAGTTTTGGCATATCTTTTTATATAAGAAAGTTCATGGATGATTTTGTATTTTAG
Seq C2 exon
ATGTTAATGAATGTCTTGAGAGCCCAGGAATTTGTTCAAACGGTCAGTGTATCAACACAGATGGGTCTTTTCGCTGTGAATGTCCAATGGGTTACAACCTTGATTACACTGGAGTGCGCTGTGTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000015307:ENSBTAT00000020360:85
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0068312=TB=PD(11.4=21.7),PF0764510=EGF_CA=PU(0.1=0.0)
A:
NA
C2:
PF0764510=EGF_CA=WD(100=95.3),PF0764510=EGF_CA=PU(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCATTCCAGGATTTGTGTCCCT
R:
CCACACAGCGCACTCCAG
Band lengths:
190-493
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]