BtaINT0061173 @ bosTau6
Intron Retention
Gene
ENSBTAG00000000595 | FBN3
Description
fibrillin 3 [Source:HGNC Symbol;Acc:HGNC:18794]
Coordinates
chr7:18048983-18050729:-
Coord C1 exon
chr7:18050604-18050729
Coord A exon
chr7:18049109-18050603
Coord C2 exon
chr7:18048983-18049108
Length
1495 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
3' ss Seq
GCCATCCGTTTCCCCCGTAGACG
3' ss Score
10.76
Exon sequences
Seq C1 exon
ATGTGGATGAGTGTGCCCGGGACCCGCTGCTGTGCCGGGGAGGCACCTGTACCAACACAGATGGGAGTTATGAGTGCCAGTGTCCCCCTGGACATGCGCTGGCAGCTGAGGGCACTGCCTGCGAAG
Seq A exon
GTGAGTGTAGCTTGCAAGAGGGAGAGGATACGAGTATGTGTGTTTGTGCATCTCCCTGAGTACATACTTGTGTATTTGTGTGCATGAGTGGTCACATGCCTCAGGTATTGGGAGAGCACATTTGTGTGTGTTTCTGTGTGAAAACGGAAAATCGAGTGTGTGAGTGTGGGTCAGTGTGCAGCCATGTGAAGTGTCACTTGTGTGGTTGTGAGATGGAAGGAGTGTGTATTTGTGTGTCTGAGCATGCAGGTGTCTTTCTGGGAATGCATCTGTCCAAGAGTAAGTGTGTATTGGTGTTTGTGTGAGTCTGTGAGTGTGTAAGTGTTTATACAAGAATGATTGTTCTTATGTAAGGCGATGGAAGTGGTTATTTGTGTGTCTACATAAGGTTGTGAGAGAGTGTGTGTCTAAATGTGGGCATGTGTTTGCACACGGGTGTGTTTGTGGAGGGGGCTGTGTGCATGTAGGTGTGTCTGTTGAGCGTGTGTTTGTATGTGTGTACACAGGGGGTGGGGCTTCCCCGATGGCTCAGCGATTAAGAATCTGCCTGCACTACGGGAGACATAGGAGATGCAGGTTTGATCCCTGGGTCGTGAAGATCCCCTGGAGGAGGGCATTGCAACCCACTCCAGTATTCTTGCCTGGAGAATCCCATGGACAGAGGAGCCTGGTGGGCTACAGTCCATGGGGTTTCAGAGTCGGACACAACTGAAGTGACTTAGCACACACGCACACAAGGGTTCTTTGTGAGTCTACCTGAGTGGATATGAAAATGTGACACAAGGGCAAATCCAATGCAATGCAAGGTGTGCAAATATGTTTATGAGTGGGCATGAGGTGTGTTTGTGAGTCTGAGTGTGCATCTGGCTATGCAGATGTGTGTCTACTGAGGGTGATTGTGTTTGTTTGCGAATAAGTGTGAGGGCGTGCTGCTGTGTGAGCTGTGTGCATGTGGCTGTGTGGATCAGGTTGTGGGTCTGTCTGCTGAGGGTGAGTGTGTATCAAGGGTGGGTTTCGGGTGTCTTGTTAGTGTGCACCTGGGTGGATGTGTGAATCAGGGTGAGGTGCCCTTTTGTTCTGGGCTTCCCCAGTGGCTCAGCGGTAGAATCCACCTGCAATGCAGGAGACAGAAGAGACACAGGTTCAATCTCTGGGTCAGGAAGACCCCCTGGAGGAGGGCATGGCAGCCCACTCCAGTATTTTTGCCTGGAGAATCCCATGGACAGAGGAGCCTGGAGGGCTGCAGTCCATGGGGTGGAAAAGAGTTGAATATGACTGAAACGACTTCACACATGTGTTTGTACCAGGGTGAGATGTAGACTCACACCCATGGTGGGGGGGGGGTTGGGGGGGGGGCGGGCATAGATGCAAGAGTGTGAGTGCATCATCGTGCATGCGTGTGTCCCTGTGCAGAAGGCGGCTGGGCACAGGCCCATCCTTTCCTGGGGCCCCTCCGCCACCTGCTGTCCTTACCAGCCATCCGTTTCCCCCGTAG
Seq C2 exon
ACGTGGACGAGTGTTCCCTGAGTGACGGCCTGTGTCCGCACGGCCAGTGTGTCAACGTCATCGGTGCCTTCCAGTGCTCCTGCTATGCCGGCTTCCAGAGCACACCTGACCGCCAAGGCTGCGTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000000595:ENSBTAT00000035613:28
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0764510=EGF_CA=WD(100=95.3),PF0764510=EGF_CA=PU(0.1=0.0)
A:
NA
C2:
PF0764510=EGF_CA=WD(100=95.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGTGGATGAGTGTGCCCGG
R:
AGCCTTGGCGGTCAGGTG
Band lengths:
246-1741
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]