BtaINT0061200 @ bosTau6
Intron Retention
Gene
ENSBTAG00000000595 | FBN3
Description
fibrillin 3 [Source:HGNC Symbol;Acc:HGNC:18794]
Coordinates
chr7:18021894-18022308:-
Coord C1 exon
chr7:18022243-18022308
Coord A exon
chr7:18022020-18022242
Coord C2 exon
chr7:18021894-18022019
Length
223 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGC
5' ss Score
9.6
3' ss Seq
GCAACCCCTGCTGCTTGCAGATG
3' ss Score
6.99
Exon sequences
Seq C1 exon
TCGCCTTTCAGGAGCTGTGTCCCTTTGGCCACGGGGCAGTCCCAGGCCCAGATGACTCCAGGGAAG
Seq A exon
GTGAGCTTCTCACCCAAGTGCTGAGAGCCCCCGAGGCCACAGCAGCCTCCTGCATTCCTTCCCAGCCCTGTCTGAGCTCTGTCCTGATTCCCCAGTCTCAGGTTCCCTCCTTGACCCATGGGTGGCCCTGGACACCGCCCCCCGCCCACCTCCTTGAAGGGAAGGAAGAGACCCTGATTGTGGCCAGGGTGTGACAGAGGCCTGCAACCCCTGCTGCTTGCAG
Seq C2 exon
ATGTAAACGAGTGTGCGGAGACCCCTGGCGTCTGCACTAATGGCCTTTGCGTCAACACCGATGGCTCATTCCGCTGCGAGTGTCCCTTTGGTTACAGCCTGGACTTCACGGGTGTCAGCTGCGTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000000595:ENSBTAT00000035613:52
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0068312=TB=PD(11.4=21.7),PF0764510=EGF_CA=PU(0.1=0.0)
A:
NA
C2:
PF0764510=EGF_CA=WD(100=95.3),PF0764510=EGF_CA=PU(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCGCCTTTCAGGAGCTGTGTC
R:
GCAGCTGACACCCGTGAAG
Band lengths:
188-411
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]