BtaINT0062508 @ bosTau6
Intron Retention
Gene
ENSBTAG00000032427 | FHOD1
Description
formin homology 2 domain containing 1 [Source:HGNC Symbol;Acc:HGNC:17905]
Coordinates
chr18:34979522-34979909:-
Coord C1 exon
chr18:34979727-34979909
Coord A exon
chr18:34979642-34979726
Coord C2 exon
chr18:34979522-34979641
Length
85 bp
Sequences
Splice sites
5' ss Seq
CGGGTACTT
5' ss Score
5.36
3' ss Seq
TCCCTGATCTCCCCTACCAGGAA
3' ss Score
10.1
Exon sequences
Seq C1 exon
AAGCTACTGACCATGATGCCCACGGAGGAGGAGCGGCAGAAGATCGAGGAGGCCCAGCTGGCCAATCCCGACGTACCCTTGGGCCCAGCCGAGAATTTCCTGATGACTCTCGCCTCCATCGGGGGCCTGGCTGCCCGCCTACAACTCTGGGCCTTCAAACTGGATTATGACAGCATGGAGCGG
Seq A exon
GTACTTGGGTCACGGGATGGGACAGGCAGTAGGGACATAGGAGCATGATGACCGTGTAGTCTGAGTCCCTGATCTCCCCTACCAG
Seq C2 exon
GAAATTGCAGAGCCACTGTTCGACCTGAAAGTGGGCATGGAACAACTGGTGCAAAATGCCACCTTCCGCTGCATCCTGGCCACCCTGCTGGCTGTGGGCAACTTCCTCAATGGCTCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000032427:ENSBTAT00000063472:15
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.246 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0218118=FH2=FE(16.1=100)
A:
NA
C2:
PF0218118=FH2=FE(10.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGAAGATCGAGGAGGCCCAG
R:
ACTTTCAGGTCGAACAGTGGC
Band lengths:
179-264
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development