BtaINT0067230 @ bosTau6
Intron Retention
Gene
ENSBTAG00000035836 | GLT25D2
Description
Bos taurus glycosyltransferase 25 domain containing 2 (GLT25D2), mRNA. [Source:RefSeq mRNA;Acc:NM_001191302]
Coordinates
chr16:66452391-66454783:-
Coord C1 exon
chr16:66454577-66454783
Coord A exon
chr16:66452668-66454576
Coord C2 exon
chr16:66452391-66452667
Length
1909 bp
Sequences
Splice sites
5' ss Seq
TGTGTGAGT
5' ss Score
5.84
3' ss Seq
TGTCTGCCTCTTGTTTTCAGTGC
3' ss Score
9.98
Exon sequences
Seq C1 exon
TTATATTGGTAGGAAGAGGATGCAAGTAAAAGAACCAGAGAAATCTGTGCCCAACGTGGTAAATCTGGTTGAAGCTGACTATTCCTACTGGACCCTCGGCTACGTCATCTCTCTGGAAGGAGCACAGAAGCTGGTTGGAGCAGATCCTTTTGGGAAGATGCTCCCAGTGGATGAGTTTCTGCCAATCATGTACAACAAGCATCCTGT
Seq A exon
GTGAGTTGCCCTGAACTGCCTACCTGTCCCTTGAGCATAATTCACTTATGAATTATGCTACTTGGTTTTGGGTAATACTTGGTATTTTTTAAAGGGGTACTCCTTTCCTAAATGATCTTTCCATAATCATGACAAAGAGAGGCCAACTCGAGTGATTACCTCCTTTTACAAACAGGGGATATAAGGCAGAAATGGTGAGTCTTGCATAGGAGTCCTCTTTAATACCTGCTAGGAGTCAGACACGACTGAGCACCTTCACTTTATTTTTTCACTTTCATGCATTGGAGAAGGAAATGGCAACCCACTCAAGTGTTCTTGCCTGGAGAATCCCAGGGACGGAGGAGCCTGGTGGGCTGCCATCTATGGGGTCGCACAGAGTCGGACACGACTGAAGCGACTTAGCAGCAGCAGCAGCTTAACTGTGCATACTATGCTCGGTCCTCTCGTCTTTGATTTTCTTACTTCCATAAACCTGTACATCTCAAGGTGAAGGTCATCTTCCTAAGCACCTCAAATTTTTCAGTTCGTTTCTTAGTCCATTGTGTATACTGTTGGCCAGGCAGTGACTCACAAGCTAGTCAGGAACCCAGACTCATGAACAGTCATTGTGATATATTGTGATACCTACGATCACAGAGATGTGTTAGAGGCTCGGGGAGAGTGGAGATGGCCTCTGAGCTGGGCGTCCACAGAAGACAGTGTGATGCTCAGAGTTGCCATAGCCTGGAGTTCAGTATGACCTAGTGCTGTATCATCACAGAGTCCCCATAGCCTGGAGTTCAGTATGGCCTAGTGCTGTGTCACGAACACGGTAAATGGTGGGTTTATGTATCAGTCTCCCCAGTAACCTGTGAGCCTCTGAGGCAGGGACCATCTTTATCTCTGTGTCCTTAGAGTCTAGTCCAAATTCTACCCATGCTACCTGCTTGATCGATGCTTCCGAAATTCGTTAATGGAGCAGACCAGGTTCTAACCTTGGCTCCTTCTCTCGTTGCTGGGTGATCTCCTCCCTAGATGGTCTTCTTTGTAGCAGTTCGATGTTCTTGTCCTGCATCTTGCCCATTTTGTCTCCTGTCCTCAGTAAAAATGGATGTGTCAGAGACTGATTTTTATCTCTGCTACCCGACAGAAACATGGAGGTCAACCATCACCCTCTTAACAGAAAGGAAATTGAAACCTAGCTGCTGAGCAGACGTCACCTCGTGTAATCGGCAGAGGAGCCCTGGGAGGGAGGGCTCCTTGTCCCTTCATTTACACTCACAGGCTGCTGGACTGCAACACCAAGCTGGTGTGCCTCCAAGCCTACACCACATCACTCACACCTTCACTCCAGCTCCCAGCCATCTCATTCACTGATCCAGGATCAAAGCATTTTCTACAAAGTGATCACTTTATTTATTATTGTGGCCCAACAGAGCTTAAACCTTAATTTTTAGAATAAGACCTGAAATTCATTTTTAAGCTACTCTATCTAAATTTGGATCTTCCCTTATAGCTTAGTCGGTAAAGAATCTGCCTGCAATGCAGGAGACCCGGGTTCGATTCCTGGGTCAGGAAGATCCCCTGGAGAAGGAAATGGCAACCCACTCCATTATTCTTGTCTGGGAAATCCCATGGACAGAGGAGCCTGGCAGGCTTTAGTCCATGGGGCCTCAAGTGTTGGACATGACTTAGTGACCAAACCACCATCTAAATTTAACAAAAATACCCTGACCTTTTTCTTTGTGTACTTGTTTAAATCATCTGAAAGCCTTAAGAAAAAAATCTGTTGTGTTTGTAGGCTAAAGTTTTCCACAATTTAAAAAAATAATCAAATCCATGAGAATTTAGGAGGTAACAAGCAAGACCCTTTTCCCCTGTTCTGTGAGTGCCCTGCCCCCTCACCCACCTGTCTGCCTCTTGTTTTCAG
Seq C2 exon
TGCTGAATACATGGAGCATTACGAATCCAGGGACTTGAAAGCCTTCTCTGCAGAACCCTTGCTCATCTACCCCACGCACTACACAGGCCAGCCGGGGTATCTGAGTGACACGGAGACCTCGACCATCTGGGACAATGAGACGGTGGCCACTGACTGGGACAGGACACACGCCTGGAAGTCCCGGAAGCAAAGTCGCATCCATCGCAACGCAAAGAACACAGAGGCCCTGCCACCACCAGCCTCCCTGGACACTGCACCTTCCAGAGACGAGCTATGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000035836:ENSBTAT00000050322:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.359
Domain overlap (PFAM):
C1:
PF0175512=Glyco_transf_25=PD(32.3=85.7)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TATTCCTACTGGACCCTCGGC
R:
CTCTGTGTTCTTTGCGTTGCG
Band lengths:
351-2260
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development