BtaINT0067824 @ bosTau6
Intron Retention
Gene
ENSBTAG00000015286 | GOLGA1
Description
golgin A1 [Source:HGNC Symbol;Acc:HGNC:4424]
Coordinates
chr11:95910988-95911957:-
Coord C1 exon
chr11:95911863-95911957
Coord A exon
chr11:95911038-95911862
Coord C2 exon
chr11:95910988-95911037
Length
825 bp
Sequences
Splice sites
5' ss Seq
CAGGTGGGC
5' ss Score
8.07
3' ss Seq
TTATCTTTGTCTTCATGCAGGAC
3' ss Score
10.56
Exon sequences
Seq C1 exon
CTGCTCGCCGGCCGGCCGTGGGGGCTGGTGACGCGGGCCGGCGCTCACGAGAGGCCCCGGAGGCGGGGCTCTGCCGGCTGCCCAGAGAGCGGCAG
Seq A exon
GTGGGCGGGCGGGGGCCGGAGACGGGAGCAGGCCTCTATTTCCCTCGGTGGCCTCGGTGTGCCCCCAAAGCGGCGCCGACTGGGTTGCCCAGGACCCAAGCCGGGGGGGCAGTGCCAGGGTGCCGGACAGGGCGAGGGTGGGGGCAGAGGCGGGCTCTTCGGCCTGGGAATCTGGAACCTGGGGTCCCGGAACTCCCCCCCTCCACCGCTCACCTGCGCGACCTTAGACAAGTCACTCCTCATTTCTGGGTCTCAGTTCCCCTGCTGTCAAGTGGGAGAGACATTGGGTCCCTCCTGGCTTTGACAGTCCACGTACGGGCGGGTCTGGGAGGAGCCTGAGTGAGTGGGATCGAAACTGCCGTGGCAGGTGGCTGGCCCCCCGAGCATTTGGCAGTCGTCTTCCAACTTTGCCGTCCTTTTTCTCAGCGATTTTCTGAATGTGAATCAAGGCTCTGGGGTTCTGGCCAGGTAAATAGTGTGTGACTGTCAGAATCAACTGAAATAAATACTGGCCCTGGGAAGACCTTAATCTCATTGAAGTTGTCGTGCTCAGGGCTCCCAAGGCGAAATGAGTTTACCCACTTACTACAATGAGAGATTCTGTTCTTTGTGCCTTTAAGTGAAACTCTCAGGCAAATCACAAATGCAAAGACCAGGGTGAGGGAGGGTAGACCACTGAGGATTATGGTAATGACAGGTTTTCTCTCCCCCCACCCCCCACCTTGATCCTTCCTGCCTCCTCTTCCACTCTGCCCGTCCCCCCAACATTTTGACCTTACACTTGAGAGGAAATATCCAATGCATTTTATCTTTGTCTTCATGCAG
Seq C2 exon
GACAGAAAGCTTTGACCTCCAAGCTGTTTTAAATCTAATAGATAAGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000015286:ENSBTAT00000020327:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development