BtaINT0069999 @ bosTau6
Intron Retention
Gene
ENSBTAG00000018085 | GTSF1
Description
Bos taurus gametocyte specific factor 1 (GTSF1), mRNA. [Source:RefSeq mRNA;Acc:NM_001034273]
Coordinates
chr5:25738900-25739791:+
Coord C1 exon
chr5:25738900-25738983
Coord A exon
chr5:25738984-25739727
Coord C2 exon
chr5:25739728-25739791
Length
744 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGG
5' ss Score
9.16
3' ss Seq
TGTTTTGTTTCCTTTGGCAGATT
3' ss Score
10.41
Exon sequences
Seq C1 exon
TCAACCAAACCAGGAGCCTTGGACAAGAGACTATGGCTGAGAGCACGTGGCGGTGCCCTCCTTGCGATGAAGACTGGGACAAAG
Seq A exon
GTGAGGGGCCTCCACGTCTCTTTCTCCACAGTGCCAAACTCTGGAGTCGTTTGCTCTAGACAGAAGGGTCTCCTTTTTTATGAACATACCATGTTGTTCAGAATGCCTTATTATTCTTACTGAGCCCCAGTACAAAGACAGTTGTATCTCTGTGCAGACACACGGAACAGCCTTTCCCACTTGATTGGAAAAGAACACTACTTTACATATGTTTTTTTCATAAATTGTGTTATACCATCTGTGTTTGGTTGTTACTAGTCATGTTTATTCGGAGAAGGCAATGGCACCCCACTCCAGTACTCTTGCCTGGAAAATCCCATGGACGGAGGAGCCTGGTGGGCTGCAGTCCATGGGGTCGATAAGAGTTGGACACAACTGAGCGACTTCACTTTCCCTTTTCACTTTCATGCATTGGAGAAGGAAATGGCAACCCACTCCAGTGTTCTTGCCTGGAGAATCCCAGGGACGGGGGAGCCTGGTGGGCTGCCATCTATGGGGTCGCACAGAGTCGGATACGACTGAAGCGACTTAGCAGCAGCAGCAGCAGGCACGTTTATTATTATTTATGTCGCTTGTGTTTCTATCCTTCAGTTAAATTCTTGCTACTGTGTCACTTAGGGTACTTGACCAGTTTTTACTTGCTTCTCTGAACTTGTTTATTATTTCTCATCTCACAAATTCGACAAGCATGAATTGGTGTTTTACCTAGTAGCACCACAAACTGTGTTTTGTTTCCTTTGGCAG
Seq C2 exon
ATTTGTGGGAACAGACCAGCACCCCATTTGTCTGGGGCACAGCCAACTACTGTGGCAACAATAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000018085:ENSBTAT00000047442:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.138 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]