BtaINT0072348 @ bosTau6
Intron Retention
Gene
ENSBTAG00000033398 | HKDC1
Description
hexokinase domain containing 1 [Source:HGNC Symbol;Acc:HGNC:23302]
Coordinates
chr28:25779220-25782409:+
Coord C1 exon
chr28:25779220-25779339
Coord A exon
chr28:25779340-25782313
Coord C2 exon
chr28:25782314-25782409
Length
2974 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
3' ss Seq
TTTGCCTTCCTTTCTTTCAGGGA
3' ss Score
13.02
Exon sequences
Seq C1 exon
CTGTTTGACCACATCGTGCAGTGCATCGCCGACTTCCTGGACTACATGGGCCTCAAGGGAGCCCAGCTGCCTTTGGGCTTCACGTTCTCATTTCCCTGCAGGCAGGCGAACATTGACAAG
Seq A exon
GTAAGACGGTCCAGCCTGGCGGGCCTCCCTCCTGCATCCAGGGAGTCTCAAGGCAGCTCTGAGTCACTGTTCACTTTATTTAGGGGTCTCAGGTTCAGGGCAGCTGGGGAGACATGATCAAGAATTTAGACTATTTACTTTTTTTTATTTACTGTGTTCCATTTTCACTATTACTGTATTATGGATTGAAGTTTGCAAGATGCTTTCGGGTTGTATAAAAAGACACATGGATAAAATTATTGTTAAAAGAGAGGTCAAGTCATATTATCAAGAGATAGGAGGGAATGACCAGTTAAGGCAAATTATAAAACTCTTAGTGTGTAATATTACATGTATCTTCCTGGGTGGTCATTATAAACAGGGAAACACAGTACATTGAAAGGCTTTTATTGTCTGATGAACAAAAGCTTACCAATGCTTCTGAAGAAATGCATTTCTTTCCTGATATTAGACTCTCAGGAGACATTGATCACATTGACACATATTTTGTTGACACTGAAGAACTTCATGGATGATGATTTTAATAAATTGTTCATAATAATTTAGAAACGTGTATCACATGACTTTCTTGGATAAAAGCACCATTCACCTGCTCAAGGAGAACAGAGTACCCTCCTGCTCTCTAAGAGGCTTATGTCAGTCAAGCTATCTGATCTGGTGTAAAAGCAGAACAGCACTTTCAATTTACAGAGAGAACCCTGGTCAGCACAGCAAGGCAGCCAGAGAGCTCATGACGATAATAAGAATGGCACCAAAGATTTAAGACTCTGTTTGATCCAGTCAGTGTCTCCATGATGTACACATTATTTTTGTTTTATTTTACCATCTTTTATTGTGGTAAAATTTAGATAACATTTACCATTTTGGCTGTTTTTAAGTGTACATTGCAAAGGTAATGCATTCTTGTATTACTGCTGCTGTTAAAATTTAATACACATAGAAATGGAAATTGGGGGTGGAGGGGGGAAAAGCCACGTGCTGCTGTCCATGGTCCTGAGTGGTCCACAGGCACCAGGACACAGCTGCTCCTCCTGACTTGGGGCACTGGGCCTCCAGGCCTCCCTCCCAGGAGTTCTGACAGATTCACAAAGACATAACTAAGAAGGAAGGGAGACCAAGGGAGAGCTTGGAGCAAAGACACCAATGGCTGAGGAGGAAAAAAAAACTTTCTTTAAAAATAAATGAAATGTAATGGCATTGAAACATGTATAATATCATGTATGAAACGAGTCGCCAGTCCAGGTTCGATGCATGATACTGGATGCTTGGGGCAGGTGCACTGGGACGACCCAGAGGGAGGGTATGGGGAGGGAGGAGGGAGGAGGGTTCAGGATGGGGAGCACGGATTATACCCGTGGCAGATTCATTTCAATGTTTGGCAAAACTAACACAATATTGTAAAGTTTAAAAATAAAATAAAATTTAAAAAAATAAATAAATGAAATATAGATTTACAATACTATATAGTTTCAGGTATATAACATAGTAATTTGATATTGTTATAGGTTGTACTCCATACAAAATTATTATAAAATACTGACTATATTCTCTTGCTGTACATTACATCCTTGTAACTTATTTATTTTATACCTAGTAATTTATATCTTTAAATCCCTTTCACCTATTTTGCCCCTCTCCTCACCCCTCTTCCTTCTGGTAACCAGTAGTTTTTCAAAAAAGAGAGACTTTAAAAAAATATGATTTTGTATAATTGTAACTAATTAGAAAGATTTTTCAACTGGGGTTGAATCTCTAAGGTTCTACATATATTCACCAGGAAAGGAGCAACGAAGCCTAGGTTCCCAAGGACTGTGGAGAGGAGGGGGAGCCCGGAGCTGAGGGCCTCAGGGTGAGGTGGCCGTTCATCCCCTGGGGTTGGGGGTGCTGCCATTAGAGTTTCTGCCCATCTCTCCTATCCCAGCTGCTCTCCTGGCCTAGACACCCCAGCTTTCCCTGCGCTCACCCACTCCCAGCTCTAGGGGTGTGGAGTTTGAGGCTAGATAACTCTTGCTTCTGGCTAACAGTGTAACCATCTTTTTAAAATTAGAAATACTTTTCCTTGGTAGTATAAAAAGTTAGACATATTAATTTTAGGAAAATCAGAAAATATGGACAAGCAAAAAGAGACTGAAAGGTACCTATAATCTTACACCTAAAGAGAACCACCGTCAACCCTCTGGTGTATGCATTGTTCCAGACCTTTTTCCAGATTTGACTGTGTGTGTGTGTGTGTGTGGTTTTTAAAAGAATAATAGAATAATTCATCATCTGTATTTGTTTAATGTGAGTTCACTTAACAGTGTATGGTAAACATCTTCCTCTAATGGCTAACATTCTCTTAAAACATTATATTTTTGTGGCTATAGAGCATTTCCTATATTGATATACAATGATAAATCCATATTGTGGAAAGACAGAATGTGTGTGTGTGTGTTAGTTGCTCAGTTGTGTCTGACTCTTTGCGACCCCATGAACTATAGCCCGCCAGGCTCCTCCGTCCATGGAATTTTCCAGGCAAGAATACTGGAGTGGGTAGCCATTCCCTTCTCCAGGGGATCCTCCCAACCCAGGGATCAAACCCACATCTCTTGCATTGCAGGCAGATTCTTTGCCGCCTTAGCCATCCATTTTTCCTGTTAAACAATGCTTTGATGAACATTTTGTAGCTTTATCTTTGATCATGAAGACATTGTGATTGATTGGATAAATCAGAAGTGGTCTTTGTTCTGTGCAGTCATGGCCAGGGAACGTGAGTTGATGTAAATTTCTGCAATTATTCCACCTAACAGTAGACCTTGCCTGAGCATCATGCTTCATGGTGCCTCTGGGTCCAGTGTTAGGGATCCAAATGGAAGCACAGTCAAAAGCATTTGACGAGCAGTTAGCTGCGGTCCCTTGCATCTATTTGATGCTGAGGTTGTGCAGTGGTTCCAGCAAACTATTGCTCAAATGAATTTGCCTTCCTTTCTTTCAG
Seq C2 exon
GGAACACTCATTGAGTGGACCAAAGGCTTCAAAGCTACTGACTGTGAAGGGGAAGATGTGGTGGATATGCTCAGGGAGGCCATCAAGAGGAGAAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000033398:ENSBTAT00000047474:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0034916=Hexokinase_1=FE(19.0=100)
A:
NA
C2:
PF0034916=Hexokinase_1=FE(15.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]