BtaINT0072896 @ bosTau6
Intron Retention
Gene
ENSBTAG00000005726 | HNRNPA2B1
Description
Bos taurus heterogeneous nuclear ribonucleoprotein A2/B1 (HNRNPA2B1), mRNA. [Source:RefSeq mRNA;Acc:NM_001045975]
Coordinates
chr4:70206063-70207085:+
Coord C1 exon
chr4:70206063-70206198
Coord A exon
chr4:70206199-70206745
Coord C2 exon
chr4:70206746-70207085
Length
547 bp
Sequences
Splice sites
5' ss Seq
ATGGTAGGT
5' ss Score
8.6
3' ss Seq
CTTTTTTTTTCCTTTGGCAGGAA
3' ss Score
10.18
Exon sequences
Seq C1 exon
CATTGATATGAACCATGGACAAGTATATTCTGCTGCCACAAAGACTGTAAAGTGCTTCATTTCAACAGCTGAGGCAAGCCAAGTGATCATTAATAAAGCTTTTCTTGGTTCCTTCAGTGGTGTTGGTAGTAAAATG
Seq A exon
GTAGGTAAAAGTTAGGCTGCAAGTTAAATCATGAAATTTCCCATCGTTAACACCCTTCTGTATTCACATTTCTTGGATCAAGCATTTTGAGTGAACTAGGGCTTTTTTTTGTTTGTTTTTAAAATAAAGACTTTTTTTTTTTTATTTCGATACTGTTCTAGCTTTACATGCATATCAGGATCAGGCTAAGGAAAAGGTAGGGCAAGATGGTTGGATCTACTTTCAGATAATATGTATTTATGAATAAAGTGTCTGCATTATAAATCTGTACATATCCAATTCTAAATACTTGGGTTTAAATGCAGTAATTCTTTCCCAATCCCTACCCTATAGGAGAGAGATAGCTTGGCTGCTGAAATTTCATTTCTTAGATGTCATCAGAGATTGATTGCCTGGCTTTATTGCCTTTTCAGGAATGTGATAATCAGGGCATATTCTACTGTATGCACCTGAGTCTTCTTTGATCCTAAGACCACCACTGAAGTTATTTAGGTTCTTTGGACAAACATGATAAACTTCTTCAGATACTTTTTTTTTCCTTTGGCAG
Seq C2 exon
GAAGGTGTCTTGCTGCAGGTAACTAATGAAGAAGTGGTCAACCACAGAGTCTTCAAGAAATAAGAAATTCTGTACCATCTGAAAGTAGTTCTTGTTGGTGCCTTCATTTTAAAAAAGCACTCTTTTAAGATTAAAGGGAAATGTTTTCTGATAAAACAGACTTCATTTAGTTACAGGGTCTTAATATAAAACAATTACAAATTGAGTATTGTTTGTAAAAGAGTAAACATCAAGTCAGCTAGAGAGATAAATGTTATCATGTTTTGAATTAGGTTTTGTGAGTAGACAGATTAAAATTCTATTTTAAATATAAAGTTATAAAATAAATACTTTTGTATTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000005726:ENSBTAT00000007527:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
3' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCTGCTGCCACAAAGACTGT
R:
TCTCTCTAGCTGACTTGATGTTT
Band lengths:
356-903
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]