BtaINT0078192 @ bosTau6
Intron Retention
Gene
ENSBTAG00000018169 | ITGB4
Description
integrin, beta 4 [Source:HGNC Symbol;Acc:HGNC:6158]
Coordinates
chr19:56490783-56491107:-
Coord C1 exon
chr19:56490985-56491107
Coord A exon
chr19:56490890-56490984
Coord C2 exon
chr19:56490783-56490889
Length
95 bp
Sequences
Splice sites
5' ss Seq
AGGGTGAGC
5' ss Score
7.75
3' ss Seq
TCCTCCTCTCTCCTCCCTAGAAT
3' ss Score
11.35
Exon sequences
Seq C1 exon
CGGAGGAGGTGGTGGAGCACTGCTCCTTCCGGGACGAGGACGACGACTGTACCTACAGTTACACCGTGGAGGGGGACAGCGCCCCCGGGCCCAACAGCACCGTCTTGGTGCAGAGGAGGAAGG
Seq A exon
GTGAGCCGGCGGGCTGGCAGGGTGGGCCTGGGTGGCCTGTCAGACCCACATCGGGGGGAGGCACTGGCTCCCTCCTCCTCCTCTCTCCTCCCTAG
Seq C2 exon
AATGCCCCCCGGGCACCTTCTGGTGGCTCATCCCCCTGCTCATCTTCCTCCTCCTGTTCCCGGTCCTGCTGCTGCTGCTCTGCTGGAAGTACTGTGCCTGCTGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000018169:ENSBTAT00000042566:17
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF079657=Integrin_B_tail=FE(47.7=100)
A:
NA
C2:
PF079657=Integrin_B_tail=PD(7.0=16.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGAGGACGACGACTGTACCTA
R:
GTACTTCCAGCAGAGCAGCAG
Band lengths:
181-276
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]