BtaINT0078205 @ bosTau6
Intron Retention
Gene
ENSBTAG00000018169 | ITGB4
Description
integrin, beta 4 [Source:HGNC Symbol;Acc:HGNC:6158]
Coordinates
chr19:56477969-56480795:-
Coord C1 exon
chr19:56480658-56480795
Coord A exon
chr19:56478152-56480657
Coord C2 exon
chr19:56477969-56478151
Length
2506 bp
Sequences
Splice sites
5' ss Seq
ACCGTAAGG
5' ss Score
6.08
3' ss Seq
AGGCACTCTCCCTGCCCTAGGAC
3' ss Score
7.19
Exon sequences
Seq C1 exon
TGCCCAGCGAGCCCGGGCGTCTGGCCTTCAACGTCGTCTCCTCCACCGTGACCCAGCTGAGCTGGGCCGAGCCGGCTGAGACCAACGGCGAGATCACAGCCTACGAGGTCTGCTATGGCCTGGTCAATGAGGACAACC
Seq A exon
GTAAGGACCCGCCCTCCTCTTCTGCCCCCAGGGAGGGAAGGGGGTGGAGAACGGGAGGAGGTCACGGAGTCCAGGTCAGTGGATGAGCCCCCACTCTGTTTGCCTGGGGGCATCATTAGGTTTGTGGTCAGGTTTGGGATTTCTTTGGAAGGAATGATGCTAAAGCTGAAACTCCAGTACTTTGGCCACCTCATACAAAGAGTTAACTCATTGGAAAAGACTCTGATGCTGGGAGGGATTGGGGGCAGGAGGAGAAGGGGACGACAGAGGATGAGATGGCTGGATGGCATCACTGACTCGATGGATGTGAGTCTGGGTGAACTCCGGGAGTTGGTGATGGACAGGGAGGCCTGGCGTGCTGCGATTCATGGGGTCGCAAAGAGTCAGACACGACTGAGCGACTGAACTGAACTGAACTGAACTTGGGCTGAGTTAGTTGCATTCCAAAGCAGAGCCCAGAAGCTCCCAGGGCAGGTGAGGATGGAAGGCCTGAGGTTATGTGTGTGCAATGGGGTCACAGGTCCAGAGTGCCAGCCCACACAGGTCAACGAGAGTGGCTCAATTCTACACGGGTCTCTTCAAGCCAGGGTGGATAGATTTAGCAAATAAAAAGCAGAGGACTCCCTGAACTTCAAACAATTTTTCTAGTACATTTTATGCAACATGTTATCAGAGCCCCTGGCAGAACTCTCTATTTTTCTCCCGTCCTGGAAGGGAGAGATGACCCCTGCACTTGTCAGGATGGAAAACTTTTCAAGGGAACTCAGTCCGCCGCTCTTGCCTGGTGCAGGGCCCTCCTCTCTGCATCGTCACCTGTTGAGTCCATCCCAGGGATGGAGAGCTTCCCACCCCCAGATACAACCTGTGAACCCTAAAGTGGGTCAGGCTTAGCACTCCCAGGTAGCCCAACAGGGCAGAGGGCAGCAGGATTGTTCTGGGCCTCAGACTCCTTGCTCTGTTCGCCTGGCCGACCAAGCACAACCTTCTCAGCCGCTGCGTCACACCTTGGCTCCTTCTGTTGGCGACTCCTGGTCCGCCCCTGGACCACTGTCAGGAAGTCTTTTCTGGCCTGGCCTTTAATCTTAACCAGGCGTGACTGGTTTTGGCCCACACTCTTAGCTCTAGCCTCACAAACGTATGAGGAAGCCCTCCTGACCCAAGGGCATCAGCCCTTTGGGGTGGTCCCCTTCCCTTCTCCCCCTGGCAGACAGATGCGACGGGGTGGACCCCACCTCAGCACTCAGAGACCTCCCCCAGGCAGACAGTCCAACATCAGCCAGTTCTTGGAGCACAGCCATTCTCTTATCAGACAGCATCAAGCTTCGCAGGTGGGGTTTTCCCCGAGAGCCCTCCTTTGGACCCCTCAGACTCTGGGATGTCTTCTGATCACCCAGAGGGCCCCATGTTGTCAGGTCGGGGCCCCTAGGCACTGTAACTCACTCAGAGCAGCCTGGGGTCTCTTCCTCCCCGCTCCCAGGGCTGTGTGTCCTCCCTTCTGGGTGTGGGGGAGCTGCCTCACCTCTGCTCCCGGCTAACTGACTCTTGTGCAACCTCCATCCCACCCTGGCACACTCAGCTCGTGCAGGCCTTGGCCTGTCCTCCGCTGCAGGATCAGGCCTGCCTCTCACCTCCCGTCCTTGCCCAGGTGGCCAGGGCAGCCTTGGCGAGTGTCCGAATGTCTCCACTTTTAAAATATTTTTTATTTATTGTTTTGGTTGTGCCGGGTCTTCATGGGGGCATGCGGGGTGATCGGTCTTTATCGTGGCGCACGAGATCTTTTCAGTTGTGGCCTGTGGGATCTGGGGCTTCCCTGATGGCTCAGCGGTAGAGAATCCACCTGCCAATGCGGGAGATCTGGGTTCAGTCCCTGGGTCGGGAAGATCCCCTGGAGGAAGAAATGGCAACCCACGCCTGTTTTCTTGCCTGGGAAATCCCATGGACAGAAGAGCCTCGAGGGCTACAGTCCACGGGGTTGCAAAAGACTTAGACACAACTTCGCTGCTCAGCAACAACGTGTGGGATCTAGTTCTTGGACCAAGGATTGAACCCGGGTCCCCTGCATTGGGAGAGCAAAGTCTTTGCCCCTGGGCCACCAGGGAAGTCCCCAGTGTTTCCACTTTGGATTTCCCAACAGAGCATTTGGGGTTTGGTTGGGGACGGTGAGGCACAGGTGGTGAGGGCACTCTTGGCTCTGGAGCCAGACTCGCACAGACGCACGTGAACGTAGGACCTTTACCAATGGGTCAAGCTGACACTAAAGGTGACTTGAGTCTAGTGTGTCTCTGCCACTCAACTTAGCGAGGAACCCCGTGGAGCCCTGGTGACACTTCTCTAAGCCAGTCACACCCAGGTTCTCAGGGCTTGGCCCATGGCTGGGCATCAATAGTTGCTCGCTCCCTGCCTTGTTCCCCCCACTCCTGGGTGCAGTTCAGGGGCCGCGCGACGGTCCTGGGGCATCCGAGACCAGGACCAGGCCAGAAGCTCTGAGGCACTCTCCCTGCCCTAG
Seq C2 exon
GACCCATCGGGCCCATGAAGAAGGTGCTGGTGGACAGCCCCAAGAAGCGGACGCTGCTCATCGAGAACCTGCGCGAGTCCCAGCCATACCGCTACACGGTCAAGGCTCGCAACGGGGCAGGCTGGGGGCCTGAGCGGGAGGCCATCATCAACCTGGCCACCCAGCCCAAGCGACCCATGTCCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000018169:ENSBTAT00000042566:29
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.106 A=NA C2=0.242
Domain overlap (PFAM):
C1:
PF0004116=fn3=PU(48.9=93.6)
A:
NA
C2:
PF0004116=fn3=PD(50.0=72.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]