BtaINT0078207 @ bosTau6
Intron Retention
Gene
ENSBTAG00000018169 | ITGB4
Description
integrin, beta 4 [Source:HGNC Symbol;Acc:HGNC:6158]
Coordinates
chr19:56477748-56478151:-
Coord C1 exon
chr19:56477969-56478151
Coord A exon
chr19:56477880-56477968
Coord C2 exon
chr19:56477748-56477879
Length
89 bp
Sequences
Splice sites
5' ss Seq
CCAGTGAGC
5' ss Score
4.44
3' ss Seq
CCCCTCCCCCCACCCCGCAGTCC
3' ss Score
10.01
Exon sequences
Seq C1 exon
GACCCATCGGGCCCATGAAGAAGGTGCTGGTGGACAGCCCCAAGAAGCGGACGCTGCTCATCGAGAACCTGCGCGAGTCCCAGCCATACCGCTACACGGTCAAGGCTCGCAACGGGGCAGGCTGGGGGCCTGAGCGGGAGGCCATCATCAACCTGGCCACCCAGCCCAAGCGACCCATGTCCA
Seq A exon
GTGAGCAGGGGGCAGGGAGGCACAGGGCGGACAGGGGCGGGCAGGGGCCCGAGGTCGGGCCCTGGCTCACCCCTCCCCCCACCCCGCAG
Seq C2 exon
TCCCCATCATCCCTGACATCCCCATCGTGGACGCCCAGAGTGGGGAGGACTATGAGAGCTTCCTCATGTACAGCGATGATGTGCTCCGCTCTCCAGCCGGCAGCCAGAGGCCCAGCGTCTCTGATGACACCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000018169:ENSBTAT00000042566:30
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.242 A=NA C2=0.444
Domain overlap (PFAM):
C1:
PF0004116=fn3=PD(50.0=72.6)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGTCCCAGCCATACCGCTA
R:
GCTCTCATAGTCCTCCCCACT
Band lengths:
168-257
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]