BtaINT0078570 @ bosTau6
Intron Retention
Gene
ENSBTAG00000013245 | ITPR3
Description
Bos taurus inositol 1,4,5-trisphosphate receptor, type 3 (ITPR3), mRNA. [Source:RefSeq mRNA;Acc:NM_174370]
Coordinates
chr23:7730324-7731119:+
Coord C1 exon
chr23:7730324-7730468
Coord A exon
chr23:7730469-7730998
Coord C2 exon
chr23:7730999-7731119
Length
530 bp
Sequences
Splice sites
5' ss Seq
GAGGTGGGC
5' ss Score
6.32
3' ss Seq
GTCCCGCCCCCTCTCCGCAGGTG
3' ss Score
13.59
Exon sequences
Seq C1 exon
CTACGATTCCAACCTCAACGCCTCCCGAGACGACAAGAAGAACAAGTTCGCCAGCACCATGGAGTTCGTGGAGGACTACCTCAACAATGTGGTCAGCGAGGCCGTGCCCTTCGCCAACGAGGAGAAGAACAAACTCACCTTTGAG
Seq A exon
GTGGGCTAGGGCTCGGCGGGATGCTGGCGTGGTCCCTCCCCTGGTCTCAGTACCCCCTGGGGTGGGCAGTGCGATCCTTAACCTAACTTCCCTCAGCGTCCCTGTCAGGGCAGGGAGACCATGTAGACCGCTGGGACTCCCCAGGAGGGAGGCTTCTCTCCTGACTCCCTGGAGAGGGCTGCCTCCTCCTGGTCCATGCACCCCATCAGTGCAGGGCTGGGTCGCAGGCAGGAGCCCCCAGCCCCTACTTCCTGCATTTCTGCCCTGTCCTCCCCACAGTAGACTCCTCTGCAGGCAGGTCTTCCTCCGTAACTCTCTGGGGTAGGGCGGCGCTGATCTGGGACCCTTGGCTCAGTGTCCACGCAGCCCTGACATCCTAGCGATGGGACCCTCGAGTATACCGGCTGAGCCCTGCTGGCACGAGCGGGCCCTGCCCCGCCTCGCCTTCCCAGAAGACCACGCCCCTTGTGAGGTCCCACCCATCACTGCTTTGGGCTCACGCTGGCCTCGGTCCCGCCCCCTCTCCGCAG
Seq C2 exon
GTGGTCAGCCTGGCGCACAACCTCATCTACTTTGGCTTCTACAGCTTCAGCGAGCTGCTGCGGCTCACGCGCACTCTGCTGGGCATCATCGACTGCGTGCAGGCCTACGAGGACCCAGGCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000013245:ENSBTAT00000053490:20
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TACGATTCCAACCTCAACGCC
R:
CTGGGTCCTCGTAGGCCTG
Band lengths:
262-792
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]