BtaINT0079612 @ bosTau6
Intron Retention
Gene
ENSBTAG00000016613 | KCNH6
Description
potassium channel, voltage gated eag related subfamily H, member 6 [Source:HGNC Symbol;Acc:HGNC:18862]
Coordinates
chr19:48503054-48504757:+
Coord C1 exon
chr19:48503054-48503139
Coord A exon
chr19:48503140-48504557
Coord C2 exon
chr19:48504558-48504757
Length
1418 bp
Sequences
Splice sites
5' ss Seq
GCTGTAAGT
5' ss Score
8.56
3' ss Seq
ATCCCGCCGCCCTGCCCCAGCCC
3' ss Score
4.7
Exon sequences
Seq C1 exon
CAGCCTCACCAGCGTGGGCTTTGGCAACGTGTCCCCCAACACCAACTCCGAAAAGGTCTTCTCCATCTGCGTGATGCTCATTGGCT
Seq A exon
GTAAGTGTCCAGGGCCTCACCCACGAATCCCAGGTTTAGTTTTGCAATGAGATATAACACAGTAACAATTTCTGTGATTGGCAGGTCCTAAGTTTGCAGCACAGTGAATATTTGCATGTGTGTACACTAACTGTGGGCTTCCGTGGTGGCTCAGACAGAATCTGCCCACAATGCAGGAGACCCAGGTTCGATCCCTGGGTTGGGCAGAAGAAAATGGAGAAGGAAATGGCAACCCACTCCAGTATTCTTGCCTGGAGAATCCTATGGACAGAGGAGCCTGGCGAGCTACAGTCTATGGGATCACAGAGAGTTGGATGTGACTGAGTGACTAACACTTTCACACTAACTATATACAGAATCTATAGCCCTCGATATATACCAGGGATCAGGGCCAGCTGCCTCATTTTCAGGGCCTCGTGCAAAATGAAAATGTGGAGCCCTTTATTTAAAATATTATTAACTATTTCAAGACAGTGAGAGCAGAGCACTAAACCAAAACCCAGGGCCCTTAGCACAGGTCCACATCGATGAATTGTGCTTGCCAGGCACTTTTCTTTTCAATATATGTTCATTTGGCTGTGCTGGGTCTTAGTTGCAGCATGCAGGGTCTTTAGTTGAGGCATGTGAACTCTTAGTTGCAGTATGTAGGATCTAGTTCCCTGACCAGGGATCGAACCGGGGACCCCTGCTTTAGGAGCATGGAGTCTTAGCCACTGGGCCACCAGGGAAGTCCCTGCTAGGCACTTTTCTAAGTCCTTATCAGAGGTCCATGTTTTGTTCCCATCACTACTCCATGACAGCCATAGTATGAGCTGTTTACAGACCAAGGAACTGAACATCCTAACTTGCCAGGGGTTACAGAGAGACCCAGTTCCAGCCCAGGGGGCCGACTCCCAGGGAACCAGCTCCCAGGGCTGTGTGCTCTCAGGCCCCACACTGTGCTTCCTGCCTTTCAAGACATGTGGCCTAGGAACAGGAGAGGCAGTGTGGAATGTTACACGCAGATTAAGTTGTCATGTTGAGAGTATTTAGAGATGTGAAAGCCCAGAAAAACAAAAACAAGGGGGGGAAAAAGGGTGAAAACAAGAGACCAAAAGTTTTCTTTTTATAATATTTTTACAACTTGAAAGAGAAAACAAATCTGAACTAAAAAAACCCATTGCCCTAGTTCTTTCTTCTCAGGAGTTTGGCCTATGGGGCCCCGGAAGCTGCCAAGACGCACACAGGGTGGAAGGAGGAGGGCAGGAAACCCAGGGGTCTTTGTTCCCCTCCAGACACCCTGGCACCGTCCTGGACACTTCTGACCTCGCCCTGGACAGAGGGTCCCTGGCTGGGGGATCCCAGGGTGGGGGAGGCTGGAGCAGGCCTGGTGGAGATGCTCTGGAGCTCAGCCGCCGCATCCCGCCGCCCTGCCCCAG
Seq C2 exon
CCCTCATGTACGCCAGCATCTTCGGCAACGTGTCGGCCATCATCCAGCGCCTGTACTCGGGCACGGCTCGCTACCACACGCAGATGCTGCGGGTCAAGGAGTTCATCCGCTTCCACCAGATTCCCAACCCGCTGCGGCAGCGCCTGGAGGAGTACTTCCAGCACGCCTGGTCCTACACCAACGGCATCGACATGAACGCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000016613:ENSBTAT00000022102:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0052026=Ion_trans=PD(0.8=3.3)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGGGCTTTGGCAACGTGTC
R:
GTTCATGTCGATGCCGTTGGT
Band lengths:
270-1688
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development