BtaINT0079613 @ bosTau6
Intron Retention
Gene
ENSBTAG00000016613 | KCNH6
Description
potassium channel, voltage gated eag related subfamily H, member 6 [Source:HGNC Symbol;Acc:HGNC:18862]
Coordinates
chr19:48504558-48505207:+
Coord C1 exon
chr19:48504558-48504757
Coord A exon
chr19:48504758-48504954
Coord C2 exon
chr19:48504955-48505207
Length
197 bp
Sequences
Splice sites
5' ss Seq
GCGGTGAGC
5' ss Score
8.02
3' ss Seq
ACGCCCCCGCCGCCCCGCAGGTG
3' ss Score
9.55
Exon sequences
Seq C1 exon
CCCTCATGTACGCCAGCATCTTCGGCAACGTGTCGGCCATCATCCAGCGCCTGTACTCGGGCACGGCTCGCTACCACACGCAGATGCTGCGGGTCAAGGAGTTCATCCGCTTCCACCAGATTCCCAACCCGCTGCGGCAGCGCCTGGAGGAGTACTTCCAGCACGCCTGGTCCTACACCAACGGCATCGACATGAACGCG
Seq A exon
GTGAGCCCCTGCCCCTCGGGCCCGGGTGGGGCGGGCCACCTGGCTCAAGTCCCAGCTCCGGCGAATGCCCCCGGGGCAGGGCGGTGGGGGGAGACCAAGGTCCCGCAGGCACTGGGCGTCCCGGAAGCCTCCTTACCTCCCGCTCCCCCAGCCCCCGCCCCGGCCGCGCCCCGCTGGACGCCCCCGCCGCCCCGCAG
Seq C2 exon
GTGCTGAAGGGCTTCCCCGAGTGCCTGCAGGCCGACATCTGCCTGCACCTGCACCGCGCGCTGCTGCAGCACTGCCCCGCCTTCCACGGCGCCAGCAAGGGCTGCCTGCGCGCGCTCGCCGTCAAGTTCAAGACGACGCATGCGCCGCCCGGGGACACGCTGGTGCACCTCGGCGACGTGCTCTCCACGCTCTATTTCATCTCCCGCGGCTCCATCGAGATCCTGCGCGACGACGTGGTGGTGGCCATCCTCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000016613:ENSBTAT00000022102:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0002724=cNMP_binding=PU(45.5=47.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGTTCATCCGCTTCCACCAG
R:
GCATGCGTCGTCTTGAACTTG
Band lengths:
245-442
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development