BtaINT0079940 @ bosTau6
Intron Retention
Gene
ENSBTAG00000003449 | KCP
Description
kielin/chordin-like protein [Source:HGNC Symbol;Acc:HGNC:17585]
Coordinates
chr4:93672165-93672658:-
Coord C1 exon
chr4:93672577-93672658
Coord A exon
chr4:93672318-93672576
Coord C2 exon
chr4:93672165-93672317
Length
259 bp
Sequences
Splice sites
5' ss Seq
CAGGTGTGT
5' ss Score
6.99
3' ss Seq
CCTGCCTCACACCACTGTAGTCT
3' ss Score
4.92
Exon sequences
Seq C1 exon
GCTGGTGAAGTCTCCTGCGAGGAGCGTGAGTGCCCAGGCATGCCCTGCACCCTGCCTGACTCTGGCCCCGAGCCCTGCTCAG
Seq A exon
GTGTGTGTATTGGGGGACGGGGCAGGGAACAACCATGAAAGGGTGCTGCTCACAGCAGCCAGGAGTGTTTCTTCACAGTAAGGGAGTGGGGGCACATCCTTAAGTCCACCAGCCATTCCAGAGTGGGTTCAGAGGCTGCTGTGGGGATGGTGAAGCTAGGGTCCTGAGAAGGGTTCTGGGTAGTCTGGGAAGGACAGGGATGGATGGAGGTGCCTGGGTTGCCATGGTGACACCCATTCCCTGCCTCACACCACTGTAG
Seq C2 exon
TCTGCGTGCTTGATGAAGAGGAGTTTGCTGAGGGTGTCCAGTGGGAGCCTGATGGCCAGCCCTGCACGACCTGCTCCTGTCAAGCTGGGGTACCTGTGTGTGGGACTTTGCTCTGCTCCCCAGCCCCCTGCCAGCACCCCACCCAGCCCCCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000003449:ENSBTAT00000033567:13
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0009313=VWC=PU(87.7=96.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGGTGAAGTCTCCTGCGAGG
R:
CTGGGGAGCAGAGCAAAGTC
Band lengths:
204-463
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]