BtaINT0079953 @ bosTau6
Intron Retention
Gene
ENSBTAG00000003449 | KCP
Description
kielin/chordin-like protein [Source:HGNC Symbol;Acc:HGNC:17585]
Coordinates
chr4:93667029-93667274:-
Coord C1 exon
chr4:93667192-93667274
Coord A exon
chr4:93667123-93667191
Coord C2 exon
chr4:93667029-93667122
Length
69 bp
Sequences
Splice sites
5' ss Seq
CAGGTGTGG
5' ss Score
6.34
3' ss Seq
TGAGCCTGCCTCTCCCACAGGCT
3' ss Score
9.35
Exon sequences
Seq C1 exon
GCTGCCTCTCTCAGGGCCAGGAGCACCAGGACGGGGAGGAGTTCGAGGGGCCCACAGGCAGCTGTGAGCGCTGTCTCTGTCAG
Seq A exon
GTGTGGCAGGGAGGTGGCCGAGGGGCTGGGGGCGGGGGGAGCAGCCCACTGAGCCTGCCTCTCCCACAG
Seq C2 exon
GCTGGCCAGGTCAGCTGTGTGCGGCAGCGCTGCCCACCCCTGTCCTGCCCGCTCCAGGTCACGGAGCCGGGGAGCTGCTGTCCTCGCTGCAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000003449:ENSBTAT00000033567:25
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.024 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0009313=VWC=PU(45.6=92.9)
A:
NA
C2:
PF0009313=VWC=PD(50.9=90.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTCTCTCAGGGCCAGGAG
R:
CTGCAGCGAGGACAGCAG
Band lengths:
171-240
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]