BtaINT0080134 @ bosTau6
Intron Retention
Gene
ENSBTAG00000044032 | KDM2A
Description
lysine (K)-specific demethylase 2A [Source:HGNC Symbol;Acc:HGNC:13606]
Coordinates
chr29:45814816-45817818:+
Coord C1 exon
chr29:45814816-45814905
Coord A exon
chr29:45814906-45817105
Coord C2 exon
chr29:45817106-45817818
Length
2200 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGG
5' ss Score
11.08
3' ss Seq
TTTGCGGGCCTGTTTTGCAGAAG
3' ss Score
7.55
Exon sequences
Seq C1 exon
ATGGATGGAGAGGGGTTGCTTAATGAGGAATTGCCAAATTGCTGGGAGTGTCCAAAGTGCTACCAAGAGGACAGCTCAGAAAAAGCCCAG
Seq A exon
GTAAGGGAACGTTTCCAGTCTCGCACTGTGAGAAGGAAGCAAGTGTCAAGTTTAGAAATAACGTTTGCCTTTGCATGTTTTTTCTGACCCAGGAGATTATTTTTTTGTTTGTTTGTTATCTTTTTTCCCCTTTGTTTAGCTATTTTTGAGTTGTGAATTTTGTTTTTTTGCATTATTGAATATTGTTCCCCCGGGACTCTGCAAATTCCCAGTGTTCTTCTACACCCTGGGGCCCTTGGAAAAGAGGAGCCACAGCCAGGCTGTTTGAGGAGGGAAATGAGGTGAGCATGGTCTGTGAGGAATGAAACTTGAGGGGAGGCAGCGACCTGAGTGAGCTGGTACATACAGTCGTACCCTAGAGTTTCCAGTTGCACGGGTTCACATTTTTGTCTGCTTCACCTTTGTGGCACAAAGTCCTGCCCTTGTGCCCAGTTGTGTCCTACAGAGGCAGTCCCTCTTCTGGAGAGAACCAGTGCCGTGACCTTGGCCCCAAGCTACTATGGTTGCTTGTCAGTAGCCACCAGTAATGTCAGAGGGCCAGAAGGACTGGTCTCTCAGGCCAGGAAGACACGATCTGCTAAGGGCATGCACAGAGGCGGCCATTGGCCTCAGGCCAGTCATCATGCTCTGGCGGTCTCCTCCAGGTACCCTGTACAGGAGAGTAGGAACACGTTTCCTTGTTTCTTTTGGTGTTTTTTTTTCCTATTTCTTCCCACTCAGGCACTGAGGTCATTGAACTTCTCAGTCTAAATAGGTCTGAGGACACGGATTTCTGGAGTTGACGAGTGCTAGAGTTCTCATTGGAGAAGGCAGTGGCACCCACTCCAGTGCTCTTGCCTGAAGAATCCTATGGACGGAGGAGCCTGGTAGCTGCAGTCCATGGGGTCACTAAGAGTCGGACATGACTGAACGACTTCACTTTCACTTTTCACTTTCATGCGTTGGAGAAGGAAATAGCAACCTAATCCAGTGTTCTTGCCTGGAGAATCACAGGGAAGGTGGAGCCTGGTGGGCTGCCGTCTATGGGGTCACACAGAGTCTGACACGACTGAAGCAATTTAGCAGCAGCAGGGTTATCATTTCAAGTTCTTCTAACTAGCAGCAGGTTCTTGTAGTAGTAACTTTTACTTTTGTCTTCTTCACTGGTGGTGGTGGTGGGTGCTTGCTGTAGCAGACAGGTTGGCAGATATTATATTTAGTGTTACCTTCTAATGCCTTATAAAAGCCAGCATCCAAAAGTTGCTTGTTCTCTTTCAGCCACAGTGATCTAAGAATATAAGGAGAAAAGGGAGCAGAATAGTTGCAGAGGGACATAGAACATCTCCTTAAGGGAGTCTGACCTGCTGCTTTGATACTCAGTGGAACATGGTGGTCAGGCTTCATTGCATCATAGCCAAGGTGGGCTCCAGGAAGGGACAGGGGACCAGAGAGCACAGGTGGCAGAGGGTGAGGTGTGCTTTTATTGTGGGATACTGGCTTCACCAAACTCGAATTCCTCATTTTCATCCTGAGGAGATTCCTCCAGGAGCAGTGTGGCTTCTCATTCTAGGCTTAATCTCTCACCTGTGGTTGGTCTCACGGGACAGCACGGGGTGCTGAGTAGAAACAGCCTGGCAGGGTCACACTCAGACCCTGTATAGGGCTAAAAGTCAGTAGGTTTACTGCTATCAGAATCTGCATCCTAGTTCAAACGTGTATATTTAGACTGTTTTTCTTCCAGCAGAAGCGTCTCTTGGGTGAAGAGCTGAATTAGAGGCAGAATTTAAAATGGTCAGATTGCGTAGGGGTAGGAGTTGCAGCCTCTTTAAAGAATTTCTTTACCCAGAGAATTATATTATAACTAAAAAGTTGGGACAGGAAATGAGTAAGGCAGGCTTTGGAATCATGTAGCTCAAATGTGGATCCCATTCCTCTGTACTTGGACACAGGCCTTTCTGTCACAGGTAGATTTCCCAAGCAACTCATTTTGAGGGTTTTGCTCTATAATCAGCTGCCTTGATCACAGATGTGAGCTCAGTTACAGTCTGGTTTGCAGACAGTGAGATGACCACCCTGCAGCACACACAGGTCCCTCCCCCATAGAAAAGCAGCAGCCTGCCCTCTGCTAGTACCCGAGAGCAGCAGAGAGGCTGACCCGGTAAGTGCAGAGGGTCTTGAAGAAAGGAGACACTGACACGGCGTTTGCGGGCCTGTTTTGCAG
Seq C2 exon
AAGCGGAAAATGGAAGAGAGTGACGAAGAAGCCGTGCAAGCCAAAGTCCTCCGGCCCCTGCGGAGCTGCGACGAGCCCCTCACGCCCCCACCTCACTCGCCCACCTCCATGCTGCAGCTCATCCACGACCCGGCCTCCCCCCGGGGCGTGGTGACTCGGTCATCCCCTGGGGCCGGCCCCAGCGACCACCACAGTGCCAGCCGCGATGAGCGCTTCAAACGGCGGCAGTTGCTGCGGCTGCAGGCCACAGAGCGCACCATGGTACGGGAAAAGGAGAACAATCCCAGCGGCAAAAAGGAGCTGTCTGAAGTTGAGAAAGCCAAGATCCGGGGATCGTACCTCACTGTCACGCTGCAGAGGCCCACCAAAGAGCTCCACGGGACATCCATTGTGCCCAAGCTGCAGGCCATCACGGCCTCCTCTGCCAACCTTCGCCATTCCCCCCGTGTGCTGGTCCAGCACTGCCCAGCCCGAACCCCCCAGCGCGGGGATGAGGAGGGGCTGGGGGGAGAGGAGGAGGACGAGGAGGAGGAGGAGGAGGAAGATGACAGTGCAGAGGAGGGGGGTGCGGCCAGGCTGAATGGCCGGGGCAGTTGGGCTCAGGATGGAGACGAAAGCTGGATGCAGCGGGAGGTCTGGATGTCTGTCTTCCGCTACCTCAGCCGCAGAGAACTTTGTGAATGTATGCGAGTGTGCAAGACGTGGTATAAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000044032:ENSBTAT00000061554:20
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.100 A=NA C2=0.777
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0064628=F-box=PU(72.3=14.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]