BtaINT0080145 @ bosTau6
Intron Retention
Gene
ENSBTAG00000044032 | KDM2A
Description
lysine (K)-specific demethylase 2A [Source:HGNC Symbol;Acc:HGNC:13606]
Coordinates
chr29:45794900-45797912:+
Coord C1 exon
chr29:45794900-45795038
Coord A exon
chr29:45795039-45797871
Coord C2 exon
chr29:45797872-45797912
Length
2833 bp
Sequences
Splice sites
5' ss Seq
TAAATGTGA
5' ss Score
-12.37
3' ss Seq
TGCTTTTACATATTGTTGAGCAT
3' ss Score
-0.09
Exon sequences
Seq C1 exon
GCTGGATTCATGCTGTGTATACTCCTACAGACACCTTGGTGTTTGGAGGCAATTTTTTGCATAGCTTCAATATCCCCATGCAGTTAAAGATATACAACATTGAAGATCGAACACGGGTAAGTAACTGTGTAAGAATTAA
Seq A exon
ATGTGAAGATGTTTCATATATCTATTTTTACTCTGCTTACTGTGTAACACTCAAACTATTATACTTTAACATATAAATGTGTACACTGCCTTTCTCAACTGGGGTTCCATGAGAGAATTAAACTTTACAGAAAATGATTTGTGTGTCTTATTTTGTCAGTTTTTCACAGGGTGTTACATAGCTGATAAATCATCCAGGATATATAGGGGAAAAGTTACATGCAGTAGATACCTTAAGGCAAGAGTTGACAAACTTTTTTGTAAAGAACCAGATAGTAAATATTTTAGGCATTGTGGGCCATACAGTATCTGTCACAAGCACTTACTCTGCCTTGTAGAAAGAAGCATTTAAACAAGTGAGGATGGCTCAAATATAATACAATTGTATTTATGGACACTGAAATTTGATTTCATACAATTTTCTTATGTCACAAAATTCTCTTTTAGTTAGATTCTGCCTTACCCCCTACCATTTAAAAGTGTGATATGTTAATGATTGATGAATCATGGAAGAGCTCTGAAAGTCTTAGTGGTACTGCTCTATAAACTTGGTGGATTTGAAAGTTTTCAGGATTAAAAATTTAAAAATAATTAATGAATTCATAATTTTTAGAAGGAATGGTTACTGACTAATGATCAGTTAATCATTTTGGTGCCTGTTTTGAAACATGTATTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCCATGGACTGCAGCACGCCAGGCCTCCCTGTTGATCACCAACTCCTGGAGTTTACCCAAACTCATGTCCTGTCATGCTGCCGTCCATGGGGTTGTAAAGAGTTGAACACGACTTAGCAACTGAACAACAACAAATGTGCTTGGGATAAGACTGCTAGAGATTTTACCGGCCATTTTTGTTCTGAAATAGGCCTCTTTATCAGAGTGTAACTTAAGTTCTAAGTAACATTTCTTAACATAAACATTTTTCTCAGGCTCACCCTTTTTCTAGGGTCAGCCTGAAATCTGCATTTTTAAGATTGGATTTAAATCCTAACTGAACATACAAATGTTCACATTTTCCTAATAGTGACCTAACCTCATTTTAGGAACTGAAACACTCACTGTACAGCCCAAGCACGCATGCGCGTGCCACACACACACACACACACACACACACACTCTCTCTCTCACACTCTTAACTTCTTTCTGGTTGAACCAAGATCACCCCAAACTCCCGAATTTTCTCTCAGAATCCAGAAACTGACTGTCCTAGCCAGATTAGCAGCCTTTATGCAACACAATGAACCCTTACCTTCACATCAGCAATGAGAGCATCTTCGTCTTCTATCCCTGTAGGGACGCATTTCTTGTGCAGTGGCAGAGATTCCAATTTATCTACAAGGCAACGAAGGCCTTCAAGCTCAAAATGGGTCAGATGCACCTGTCGGTCCTTTCGGGGGCTACACTGGGAATCCCACACTTGGCCATTCTGGGAACCCCGGCTAGAGTCAGAGGATGAGTCCCCAGACAAAGTTTTCTTCAGACTTGGAAGACTTCTGCAGGTTTTGCCCAGTCCATCATAATCCAGGTTGACCCCATTGGCCACAGGGCTGGTGAGGACAGAACGTCTACTGCTCAAGCGCCGGGGCTCTCGGTCTACTGCTTCCTCGTCCCCGTTTCCAGACTCCAACCCATTTAACTCCAAATCTGCCAGTATGAAGAGAAAGTGTGGTGTGAATGTGCCACTCGGCCATGTGATCAACAAGAGAAATAGGTAGTTATGGGAGGGGCCCTGAAGTTATAAACGACAAAGTCACCCCAGTTTAAAAACAGTCTTCCCTATTCCAACCCATTTATCTACTGTTGAAAATCAGTTACAGGTAAAAACAGGATCCTGAGTTAGTAGGACAACTGAGGCAACAGTCAATTGGATTTTTAAAAGATTGGGAAGGGTTCAGTCTTTAATAAACAGTGTGCTGAAAATAAGTTACCCATGAAAATAGCTGTACATGAGTTTCAAGTTCAAACTTAATTTAAGGATTATGATCTCATTATCTTTTAAAAGACTAGTACTAATATGAAGCACACTGCCTTCCCTGGTTGCTCAGTGGTAAAGAATCTGCCTGCCAATACAGGAGACACGGGTTCGATCCCTGGGTCAGGGAAGATCCCCTGGAGAAGGAAGTGGCAACCCACTCCAGTATTCTTGCCTGGAAAATTCCATTGACAGAGGAGCCTGGCAGGCTACAGTCCATGGAGTTGCAAAGAGTCAGACATGATTTAGTAACGAAACAACAAAAACATGAAGCACATATATTTAAAAACCACCTTTGTTCAAAATTTTGGCCATAAAATTAAGCTTTGGAATCAAAATCTTAGCAACATGGCTAATAAAATAACATGAGTATTTTTTAAAGAAAGATTTTGATAGTCAAAACAAAAGAAAGTTTTGAAAGAAGAATTTTTAAATGTTAACTAGTCTTTTATTATGAAAGAAATAAAAGCTATTAATAATTTAGAAAATACAGGAAGGTGCAAAGAAGTAAGTCATCCTGTATTTTCCACCCGTGGAGAAACTCAACCGTGTGATGGATTGTCTTTCCATCTTTTTCTATACATATGTGTATAACTACAACTTGACATATTTTCAAACAAGATTAGGATCATGCTGTATATACAATTCTATATCTTGCTTTTACATATTGTTGAG
Seq C2 exon
CATGTTTTATTTTCAAATGACAACATCAATTATCCTCAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000044032:ENSBTAT00000061554:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0237317=JmjC=PD(17.8=38.3)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]