BtaINT0081410 @ bosTau6
Intron Retention
Gene
ENSBTAG00000000933 | KIAA1984
Description
Bos taurus KIAA1984 ortholog (KIAA1984), mRNA. [Source:RefSeq mRNA;Acc:NM_001035502]
Coordinates
chr11:106371519-106372245:-
Coord C1 exon
chr11:106372127-106372245
Coord A exon
chr11:106371641-106372126
Coord C2 exon
chr11:106371519-106371640
Length
486 bp
Sequences
Splice sites
5' ss Seq
AGGGTACGC
5' ss Score
8.18
3' ss Seq
TGCCCCTCCCCCACCCACAGAGC
3' ss Score
10.6
Exon sequences
Seq C1 exon
AGAGAGGGCGGGAGGTGCGGAGGGGTCCTGGAGGACCCCCAGGGCCGCCATGAAGATCCGCAATGAGGCAGAGATGGAGGAGCAGATCCAGGAGCTGAAGACCATCACTCGGCTCCAGG
Seq A exon
GTACGCCTGCCACCGGGTGACTCGGGGCTCCAGGTGCAGGACTGTTGGTCCTAACACAGAGACAGCCCAGGGCAAACTGGCTAGGGGCCAGGCCACTGCTCACCCACAAGCAGAGCTGGAAGGATGGATGGGAAGGGTCTGCCATGGGGAGGGGCTGGAGAAGCTGGGGGCTTCAAAGAGATTTGTGAGTATAGTGGGCCCAAAGCCAGAGGGGACAGGAGCGTCTGGGAGTGATGACAGGCCTGCCCATCCTGGCTTCCACCTGCCCCACCCACCCCACCACCCAGCAACACTGTCCCCTGAACGCTGAGCACCGCTGGACAGCGAAGTGGGCCCCCATGCAGGCTGGAAGGAAGCTGCATGGGCTTAGAGACAGCAAACTCATGACCCCACTCCGGGCCTCCCCGGCCCAGAGCCTCGGCCACCAGGAATCCAGGCCCAGCCCTTGGCCCACATCCCACTGCCCTGCCCCTCCCCCACCCACAG
Seq C2 exon
AGCAATGTCGGGCGCTGCAGATCCAGTCCGTGAAGGAGAAGACAGTCAAGAACAAGGCCACGCTGGCTCTCCTGCGCAGCAACATCCGCCGCAGGTCCCAGGAGTGGGCTTTGGCCAAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000000933:ENSBTAT00000042795:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.083 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGGAGGGGTCCTGGAGGA
R:
GCCAAAGCCCACTCCTGG
Band lengths:
217-703
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development