BtaINT0081417 @ bosTau6
Intron Retention
Gene
ENSBTAG00000000933 | KIAA1984
Description
Bos taurus KIAA1984 ortholog (KIAA1984), mRNA. [Source:RefSeq mRNA;Acc:NM_001035502]
Coordinates
chr11:106370382-106370859:-
Coord C1 exon
chr11:106370692-106370859
Coord A exon
chr11:106370487-106370691
Coord C2 exon
chr11:106370382-106370486
Length
205 bp
Sequences
Splice sites
5' ss Seq
CAGGTGCGG
5' ss Score
9.13
3' ss Seq
CCTCCACCCCCCAACCCCAGGTC
3' ss Score
8.44
Exon sequences
Seq C1 exon
GTGGCGCGGGAGAAGCTGCGCAAGTATGTTTTCGACCGCGTGAACGTGCACAACGTGCTGATCCACTTGGTGCGGCGGCGCGGGCGGAAGCTGGAGAGTATGCAGCTGGAGCTGGCCGGCCTGAAGAGCCAGCCGGACGCCACCAAGGAAGAACTGCGCCTGCAGCAG
Seq A exon
GTGCGGCCGAGGAGCGGGGCTGAGCAGGGGGCGGGCCCTGGGGAGGCGGGGCTCATGTGCCGGCCGGCGCGGGGCTGCGTGGGACGGGGCTAAGTGAGACCCCGCCCCTAGGAAGAGAGGCCAGCCCCGCCCCCGTGAATCTCTGGGCTCCCAGGTGGCCTGTCCCCAAGGCACTCTCAATGTGCCCTCCACCCCCCAACCCCAG
Seq C2 exon
GTCATCCGTCAGCTGGAGAACAACATAGAAAAGACGACGATCAAGATCACCACAAGCCAAAATATCCACTTCCTGTACATGGACCTGCTGGACCACCTGAAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000000933:ENSBTAT00000042795:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF053358=DUF745=PU(15.7=32.1)
A:
NA
C2:
PF053358=DUF745=FE(29.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAGAAGCTGCGCAAGTATGT
R:
TTTTTCAGGTGGTCCAGCAGG
Band lengths:
264-469
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development