BtaINT0084087 @ bosTau6
Intron Retention
Gene
ENSBTAG00000027181 | LAMA3
Description
laminin, alpha 3 [Source:HGNC Symbol;Acc:HGNC:6483]
Coordinates
chr24:33206676-33209018:-
Coord C1 exon
chr24:33208879-33209018
Coord A exon
chr24:33206792-33208878
Coord C2 exon
chr24:33206676-33206791
Length
2087 bp
Sequences
Splice sites
5' ss Seq
TTGGTGCGT
5' ss Score
6.18
3' ss Seq
TGCTGACACTTTCTCTTTAGGTC
3' ss Score
9.91
Exon sequences
Seq C1 exon
GTGTCTTCCGGGCCTCTTTTTGCCCCCATGTGCTTGGCTGCCGGGACCAAGTGATCAGCGGAGATGAGGTTGAGTTTGACATCTCGGAGCCGGAGGTGGCCCTGACTGTGACAGCTCCAGAAGGAAAGTCCTTAGTTTTG
Seq A exon
GTGCGTTCTGCTTTTTCCTCTCTTGCTCTTTACGTGCTTGCCTTGGTCGGCTGCTCGGTGTGTCTGTTCTGGCTCATGACAGTAATTCCTCCAGGGAATTGAAGCCATGTTTATAGAAAAATGTTTAAATTTTACAGCTGCCTTTAGCAAAAAAAGGTCTGTGACTATTAAAATCAAGGGAAATCAGAATACTAGAGCAGCCCCGCCTCACTCTCATCTGACAAGTCTCTCTCTGAGGCATTGAACACTCCTTTGTTCTTGAAACTATCTTGTTTTGGCTCCCATAGCTACTTTCTCTTGGCTTGCCCTGCCTTCTCCAGTGCTCCTTCAGTGAGTTCTCTTCCCTTTCATCCCTTTCATGTCAGTGTGCCCTTGGGCTTGACACTGAGACCCCTTGTTCTAAGATTTCTCTTCATATACCATCATCTGTGCCTGTTGATTCTGTTCACCCCTCTGTGGGAATGATACCCACACCTGTGACCTCATTTGCCATCTTTCCTGAGCTCTAGGACCATCTGCTGTGCATCCCCATAGCCAGAGTGCTCACAGGTCCCTCCAGCTTAGCCTGTTACCTATATAGACCCCAGGTGCCCTGTTCCCTGTTTTTCACCTTGGCTGGTGGAATCATGGTCACCCAATGCCTGTAAAGCCTTTGAGAGCCAGCGAACACTGTCCAGGCCTGCCCTGCACCCTCCAATTCTTGCTCATGCCTCCTTTCTCTCTGAGGATGTCATCTCAGGGACAGGGGATACATTTTGTATCCCTGTGCCTGAAACACCGTCTGGCACAGGTGTTCGGCAATGTTTATTGAATTGAATAACATGAGAGCAATAGACTCTGTAAACTGTCAGTGGGTGCTGCTGCTGCTGCTGCTAAGTCGCTTCAGTCGTGTCTGACTCTGTGTGACCCCATAGACGGCAGCCCACCAGGCTCCCCCGTCCCTGGGATTCTCCAGGCAAGAACACTGGAGTGGGTTGCCATTTCCTTCTCCAATGCATGAAAGTGAAAAGTGAAAGTGAAGTCGCTCAGTCGTATCCGACTCTTAGCGACCCCATGGACTGCAGCCTTCCAGGCTCCTCTGTCCATGGGATTTTCCAGGCAAGAGTATTGGAGTGGGGTGCCATTGCCTTCTTCCGTCAGTGGGTGAGTAGTTGACAAAGATGGTTGAAATTTCCTACAGCATTTGTTACTGGTGTGGTCTGATTTATACAGGTACAGAGAGAATACAGGGCGGTATTTTTAAAGACTGGGGCCACAATTATTCATAATAGAGTATCTGATAGGATAGGCATTTCAGGGGCAAGCCACCATATGAGTCTCCCTATCGGTCCTGCCGTTTCAGTTTGCTTACTCTCTGAAAATACAGAATGAGGACTTCCCTGATGGTCCAGTGGTTAAGACTGCTCACTTCCAATGCAGGGGGCTCAGGTTTGATTCCTGACCAGGGAACTAGCTCCTACATGCTCCTACTGAGAGTTCGCATGCTACTAGAAAGATCCCAAATGCCCTGACAAAGATCAAAGATCCCTTGAGCTGTGACTAAGACCTGGCACAGCCAAATAAATATGAAAGAAAAAGAAATACTAAAAAATAAAAATAAATAAATAAAAATACAAAATTCCACCCCCTGGAGATCCAGGGTCATCGCAGGGATGGATCACACAGGGCCCTGACATCATAGTAGGTCTCTGTCTCCTGTCCCCGCCCAGCACACAAGGCTGCTGCGCCTCTGAGCAGGCGCTCCAGGGGGTCTGTCCCCCCAACTCATTATCATTTCCCTAGGGGGAATGTAGCCTGAGTCTTCAGCACTGAGTTAGGGTTGCTTTGTGATTCTTTTTTTGTAAGTACTGTTTCATGTGGTCTTGGACTTAACAATAAAGAACACTGATCTGGCAACCCACTCCAGTATTCTGGCCTGGAGATTCCCCATAGATGGAGGAGGCTGGTGGGCCATAGTCCATGGGGTTGCAAAGAGTCAGACACGACTGAGGCGACGTAACACGATCTTAGTGAAGAGAAAGCATGGTGGAGCCGTGGGTGTGCCGTGCTGCTGAAAATCCAAAGACGTGCTGACACTTTCTCTTTAG
Seq C2 exon
GTCCGTATCCTAGTGGTGCCTGCAGAGAATTACGACTACCAGATCCTTCACAGAAAATCACTGGACAAGTCATTGGAGTTTGTCACCAATTGTGGAGGAGACAGTTTTTATATTGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000027181:ENSBTAT00000060991:28
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]