BtaINT0084130 @ bosTau6
Intron Retention
Gene
ENSBTAG00000027181 | LAMA3
Description
laminin, alpha 3 [Source:HGNC Symbol;Acc:HGNC:6483]
Coordinates
chr24:33082750-33087476:-
Coord C1 exon
chr24:33087307-33087476
Coord A exon
chr24:33082934-33087306
Coord C2 exon
chr24:33082750-33082933
Length
4373 bp
Sequences
Splice sites
5' ss Seq
CAGGTATTA
5' ss Score
7.26
3' ss Seq
TTGCTGTCTTTCCCCTGCAGGTC
3' ss Score
13.88
Exon sequences
Seq C1 exon
CCATTGCAGGATGCGCCAGCCATCTCCCCGAGGAGCTCAAAGGCATGGAGAGAAGCTCAGTCTTGCCCACCACTTCCAGGCGTCCAGACCAGCCACAGAGCCCTCCGGTTTGGGGACAGTCCCACGAGCCACTTGCTATTCATGCTTCCCCAGGAGTTGCTGAAATCCAG
Seq A exon
GTATTATTTCATGTTTTTGCCCCACGCCAACTCAGACTCTGACTCTATGTAGGATTCTACACTAGGGCAGGCTAACTGCCATGATGCCAGGCACTTGCCACTGAGGAAGGGGCTGGTTGTTGTTTAGTCACTTAATCATGTCCAGCTCTTTGTGAAACCATGGACGGTAGCCCGCCAGGCTCCTCTGTCCTTGGGGTTCCCCAGGCAAGAGTAGTGAAGTGGGTTGCCATGCCCTCCTCCAAGGGATCTTCCTGACACAGGGATCAAACCTGTGTCTCCTGCTTGGCAGGAGGATTCTTTACTGCTGAGCCACGTGGGAAGTCCAGTGAAGTGGGGAACAACCTTGTTTATGAAAAGAGGTCCTGGCCTGCCCAGTACACAGAGCCCAGCCACTGGAGCAGCCTTCCTCCATGTGGCCAGAGGCACACGTGACAGGTGCTGCTCAGACCCTGAAACAATCAGTTCAGCTCTGGTTTAGAACTGACAGTGTGCTAAAAATAAGACCGATATGTCTTTCCAAAGCTGCTATTTATTTCTGTGATACATCACCTTTCTTCTCCTGCATTCTACAGTCAGAGAAAAATCATTCTTTCAGGAAGACTTGGTGCCAGATAACATCATCTTTAGAGAATACATTGGGACGTTTTGTGCTAACAAGTTGCATCACTTTGGGGGAGGAGGGAAAGAGCAGAGATATTAATTGTGTCAGGAAAAAAAGAAAGGCGAGGCTTGTCATTTTCATATAATTTGAAGGAGACATAAATAAAACGGTGCCCAGAATTCTTTGGTGACTTATCTATGAGGCAGAATTGCCCGAAAGTCAAAAAGACCTGGCTTTCCCATCTTGGCTTTCCATCCACTCGCTCAGCCACTGGCTCACTGTGTGACCTCATGCCACAAGCCAGTTCAGGTCCTGGGGGTGCAGATATCAAGATGAGATTAGATGTGCAAGAGAATGGCTGTTCCTCTGGAAGATAAAAGGAGGGAGCAGGAGCTGGTGGGGAGAGCCTTCAGCTAAGACATGGCTGGGGTACTGTGAAAGGAGAGGGGAAGGCAGACAGAGGTGGGAAGAGCCTCAGACAGCAGGGAAGCTCCGAGGAAGTCAGGCTGGCGGGTGGGCATCGCAAGCAAAGATCATCACCAGTGTTGGCAGAATGGCTTGGCTCTTTTCTGCTGAGCTTGATGTGTGGCTGGGAGTCACTGGGTGCCACTGCGGTTCTGAAAGAGGGCCAGCTGGGTGCTGCCAGATGGCGGTGCCCCAGCAGTGGGGTCTCCTGAACAGAGCTCTGAGGGGCAACTCCAAGGCCACCATACTCTGCTGTTCAGCTTGTCTAATTATACCACGTTTAAACGTGGCATAATTACACCTGCCTCACATGTTTCCACAAATTCTTCAAATCTCAGTTTTCTCATCAGTCAAATAGGGTTGGTAATGTCTTGCTTGGAGGGAGGAGAGGTCATAGGTTGGAATGAGCTGGCCCTCGGAGGGCTCAGTGAGCAAGTGTGTGATTCTCAGGGAGGTGTGAAAGCCAGAAGGGGAGGGGCTGAGTGTGTGAAAGCCAAAAGGGGAGAGGCCAAGCTCTGAAGGTGACCCTCAGCCCCCAGCTCAGACTCCAGTAGACTCGTGGACATTATGGAGATCCCTGATTTGGCAAAGCTGTATCAGTGGGAGACAGGCAGACAGCAGAGGTGGTGACCTTCTCAGCTGTCTGCCCCTCCTGGGCCGACCCCGCTCCCCAGCGCTGCTCTTTCAGTCACGCTGACCATGATGGCAGCAGTCTCCCTGGGATGCTGCATGCACTGCCCTTTCCCCACCCTTCAGCCTCCCTCCCCGCTTCCCCAGCTCTGAGGTTGTTCCGAGAGCTTTGCCTTCCCCCCTCCCTCCATGGCCCCTTCTCTCCTGCATCCTTTCTCAGCACATTCACTGCGACCTATCTGGCTTCCTCTGATGATTGAACCCAGGCATCTTCCCATCCAACACTGAATTATATACAATAAATGGAAAAAGTAATATTCTTAAAGGGAAAGTGGGAAAAAGTAATCCTTAGTACATAGAATTTTAAAATTATTTTAGTCCCCAATACTGTAGCAATCAGAGTGTATTTTCAGGATCTTGCAAGATTTGGACTATTCTGTCATTCTTATCCTGATTTCTATTCTAGCAAGTTTGGTCTCTGCTTTAAAACCCTGTACCACCATTTTAGGGACTTCCCTGGTAGCTCAGTTGGTAAAGAATCCGCCTGTAATGCAGGAGACACTGGTTCAATTCCTGGGTCTGGAAGATCCGCTGGAGAAGGGGGAGGCTACCCACGCCAGTATTCTTGGGCTTCCGTAGTGGCTCAGCTGGTAAAGAATCCACCTGCAATGCGGGAGACATGGGTTTGATACCTGGGTTGGGAGGATCCCCTAGAGAAAGGAAAGGCTACCCACTCCAGTATTCTGGCCTGGAGAATTCCATGGACTGATTGCAAAGAGTCAGACATGACTGAGCGACTTCCCCTTTCACCACCATTTTAACCTCTGGGTGAATGTAAAAAAAATGCTTCTTTGCTCTCTGCCTTACCTTCCAATCCTCAGCAATAAAGACTCATAGCTGCAGTACAATATGCCAGGATTTGAAGCTACTGATGTCTTTTTGGGGTGTTAGTCAGTTAGTCTTTTCTGAAAGAAAATTGCTTTAAGAAATAATGCTGGAAAGCAAATGTCAAGTCCAATAACAAAGCACACATATGTAAAGTACTTTAATTCTGTAGCAAGTTCTAATATCCTCCTCAAATTGGCTAACCCTCGTTCTCCAAACCTCCGCACTAAGACGCAGCTACACGAAGAGACATGCTGAGCAGTGTCACCATCTGGTCAGTTTAATCTCACAAATATAGATTTCTATTTCATTTTGAGGAACTCTACCCTCAAGGAAACTTGCAAATCTGAAGAATGAAAGTGCATCTCCAGGTTTGCTCAGCCCCACAGTATTAAAAAGCAAAGAGATGTAATAGTGTCAGTATTTCTTCTACTTCCTGATTCTGCCTCCACATTTTCCATTTAATTCAATTCAGTAACTGTTTCTTAGGGCTTCCCAGGTGGTGGTGGAGGTAAAGAAGCTGCCTGCCAATGCAGGAGACAGATGCGGGTTCCATCCCTGAGTCAGGAAAATCCCCTGGAGGAGGGCATGGCAACCCGCTCCAGTATTCTTGCCTGGAAAATCCCATGGACAGAGGAACCTGGCAGGCTACAGTCCACTGGACATGACTTAGCGAGTAAACCTCAACCAGGGCATCTACACACCACAAACCAGTCCAAGAATGAAACATCCATTCTTTCATTCTCAGAGCTCATCATGGTGCCTTGTACATATGACCCACTCATTAAGTATTTGTTGAATGAATAAGTAAATGGATGAATGGATGTGAGTTTGCATAGAAAGTAAAGCTTGCTTAGCCACATGTGCCTATGTGCAACCATCATGCAAAGGAATATTAACTTTAACTCTCTGCTTTTACTGCATGATGCTTGCTCAATTCCTGTTCCATCAAAGGTGAGGTATTAAGGTCTGAGAAACATAAGGGTGGGCAAGAGAAGGTGGATCTGGACTTCTGTGCATCTGTGTTAAGTATATCTTACAGAAAGAAAATGCTTAACTCGAATCCTTGTTGTTCAAGTTTTTCCCTGACTTTTCCTCGCAACTTTCTTTTCCCTGCATGTATATGAAATAGAAAGCATATTCATTGGGTTTAAAGATTGAGGCTGCTCAGTGAAATAAGACAGTTGCAAAAAGACAAATATTGTATGATTCTGTTTCTATGAAACACCTAGAACAGTCAGATTTTTAGAGACAGAAAGCAGAATGGTGGTTGCTACGCACTGCGGGGAGGAGGGAATACAGAGCTGTTGTTTAATGTGTAGGGAGTTTCAGTTTTACAAGATGAAAAGAGTTCTGGAGATTTGCTGCACAACAGTGAAGGTACTTACCACTTCTGAGCTGTATTCTTAAAAATGGTTAAGATGCTAAGCTTTATGTTATGTATATTTTACCATAATTTTCTAAAATGCAGATTTTTTTTTTAAAGTAGGTCATCTTCTTCCTTGCCATTCACTGGGACTTACATCGCTAGCTGAGGTTGTCATAAAACTTCCTCTTATTCCCCAACACAATAAGGAAATTATACAACAAAACTTTTAACTGCTGAAAAACAAGCTTTTAAAAACTCCCAGAGAAACAGGTTGTTTAATCAATTACATGCCTTAGTTTATTCACTTAAATTATGGAGTAGTGGGGGGCTGCTCCTCACCCTCTCTCCTGACTTTAGAGATTTGGAGAAACACGACAAACCTCTTGTTTTCCTTCTTTGCCTTTTGCTGTCTTTCCCCTGCAG
Seq C2 exon
GTCACAGTTTGCCGTGGATGTGCTGACAACAGCGTCCAGAGGGCTCGTGTTTTATACGGGGACTAGGAGCTCCTTTATGGCTCTTTATCTTTCAAAAGGACGGCTGGTCTTTGCCCTGGGGGCAGAAGGGAAAAAACTGAAACTCAAAAGCAAAGAGAAGTGCAATGACGGGAAGTGGCACACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000027181:ENSBTAT00000060991:68
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.105 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0221019=Laminin_G_2=PU(44.6=87.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]