BtaINT0084418 @ bosTau6
Intron Retention
Gene
ENSBTAG00000000793 | LAMC2
Description
laminin, gamma 2 [Source:HGNC Symbol;Acc:HGNC:6493]
Coordinates
chr16:65767861-65771215:+
Coord C1 exon
chr16:65767861-65767960
Coord A exon
chr16:65767961-65770955
Coord C2 exon
chr16:65770956-65771215
Length
2995 bp
Sequences
Splice sites
5' ss Seq
TAGGTATGT
5' ss Score
7.76
3' ss Seq
ACTCCATTCTTGTCCTCTAAAAA
3' ss Score
0.76
Exon sequences
Seq C1 exon
GTAATTACAGAAGCCCAGAGAGTTGACAGCAGAGCCAAGAATGCTGGAGTTACGATCCAAGACACACTCAACACATTGGATGGCATCCTACATCTAATAG
Seq A exon
GTATGTGGAGTATCCACAACCTTCCAACCTGTGTTCCAGGGCTTCTCCCCAGAAGATTAACTAGACTTAGTCCCGATGCGTGGGAATCTCAACTTCCCTTAAGGGTGTCAGGAAATTTGCTTTGTTTCCAGGCTCAGATACCTTAGGCAGGTTGCTTTTCATTTGCTGTGGTCTATTTTACCATCTCTAAGGTGGGTCACTGGGCATCTGCCTATTGCCCTTGGAGATGAAAGTCTGTAGGTCAAAGAACTGGGTGTACTTGGGGAAGGTATGTTGAGGCTCAGAGAGGTTAATAATGTTCTGCAGATCACACAGTAAATTGTGGAGGTAGGATTCGGACTTCACAGTGAAAGAGAATACTGGATGGCTTGACAGCCCCACTACGGATTCTGACCTTGATCCCGAGAATCTAGTGGACAGTGTCAAGCAGAGGAATGGCGTCCGTACTGTATATTTCGGAAAGATCACTGGAGCAGCTGGGTGGAGGAGAGTTTGCAGGAGGCTTAGACAAGAGGCAGGATAAGATCATTTTGGAGACAGTTGTAGTAATTGAGAGGTGAGAGAGGTCTAAGACTGTAGGAGTGGTGAGGGGAAAGACTCTCCCAGCCTGTGAGATCAAGAATCTCTTGCTGAGAGACTTCCCTGGTGATCCAGCGACTAAGGCTCCACTCCCAATGCAGGGGGCCCAGGTTCGATCCCTGGGCAGGGAACTAGATCCTGTGTGCAGCTACTAAGACCTGGCACAGTCAAATAAATACATAAATACTAAGAAAAAAGAATTACTTGCTGATTCTGCTGTTTGTCCCTCCCCAGACTACAGTTGGGGCTTCCCAGGTGGCGCTAGTGGTAAAGAACCCACCTGCCGATGCAGGAGACATAAGATATGGGTTCGATCCCTGCGTCAGGAGGATCCTCTGGAGGAGGGCTTGGCAACCCACTCCAGTATTCTTGGCTGGAGAATCCCATGGACAGAGGAGCCTCGTGGGATACACAGTGCATAGGGGTGCAAAAAGTTGAATGCTACTGAGCACACAGGTGCACATACACACACAAACCACAGTTACACTGTGCTGTGACTGGTTGTGGAAACTTGAGCTGCCTGGTAGATGATCCAGATGAAATGTCAAAGAGGGAGGTCCATGAGACACTATAGAAATTTTAGGCTAAAATAGATTTGATGGCACCCCATGGCAGCAGCTCCAGTTACCTCACCGCATCCCTCCCTAAAGAAAGTTCAGATAAATTAAAATCCAGGATTTGGGTAGAACTGATATCAAACCTTCTGTGGCCTGTTTTATCAAGCTTGGGCCGCACCAGATATGGAAGTAGGGCTTCAGTCAGGGATTCCAGCCATACTTGGGAGAGCCACTTTCAAACTTGGCTTTTCTGTGGAGTGTCATCATCACCCTGAGAGACAAGTATCATCTGCATTGTTTTCCTGATGGGTCCGCTTTGTGATCCAATGAGTCCCAAAGAGTAAAATACCCTCTTAAGGTAAAAAAAAAAAAAATCCCCAGCTGAGAGTTTAGCAGCTTTGTTTAGTGTTCTGAAAAAGGCAATGAAACTAACAGGGCCTTTAGAGGAAACAAGAGCATGGGCAGGGAGGCTGGCTGAGAACTGTCAAGCACTTTCTGTGTGCCAGGCACTGAGCCAGATTTTTTTGTGGTGAATGGTTGTGTAAAATTTGTAAAGGTTCTGTGAGGTGGGTTTTAGGGCTTATGTGGTGGCTCAGTGGTAAAGAATCTGCCTGCCAAGCAGGAGATGAGGGAAGATCACCTGGAGAAGGAAATGGCAACCCACTCCAGTATTCTTGCCTGGGAAACCCCATGGATGGAGGAGCTGCGTAGTCCATGGGGTTGCACAAGAGTCGGACATGACTTAGCAACTAAGCAACAACTAATGAGGTGGGTTTTATTATTTTATTTCATAGAATAGTGAACAGAAGCTCAAGGAGTTTAATACTGCCCCACAGATCACATAGTAAATAGGGGAGACAGGATTCCACCCGAGGTCTCCGTGTCTGATGCTCCTGCTGTTTGCAAGAAGCTCATGCTGCCTCCCACGGACGTTTTGCCTGCAAGCCTGCTTCACTTCTCCTGCATGTCTTAGAGCCCTAAATTCTAGACTCCTCCTCTGTCCCCAGGGGAAGGACTGATCTACTGGATCAACATTTGGGTTATTGTGCTGTTTCTACTTTGTCTGGTCTCTTGAGTCCTGGAAAAATTACAGTTTAATCTCTTTAGCTGGGATAAAACTTCTGCAGTCAAATAGATCTGACCTTGAATTGTCCACTCAAACCTATTCAGACCAAACGGGTCTTGCTTGCACATGAAGGGTCAGGTGCCCTTCATGCTGACGTGTCCGATCATTTATGAGTAAAGCATACCTGAACAAATGTAACCACATTTCATATTGGAATAAACTAATGTCTAGCCAGATCTCCACTGTTCCAGGCCAGAATGAAGTCTTCCATCATTTCATACAGCTGGAATGCATCCCTTAAATAGCAAAGCCTACCTTGGCCTCCCTAAGCCCTGAAACCCAGCCAGTTTCTAAAGGTCTTCTAATAGAAAACAGCAAGAAATTTCCTAAGGGTGATTCAGAGAGCAGAATTTGGAGTTGATTCTGATCCTAAAGGGATGAGCTGTGTTGGGCAGACACCTTGGACAGTGTTCAGTCCCTGTGACCTTCAGCCTTCATCTTTTCAGAGCAGAAGCTGTTGACTCTATTGTGAAAACCGAAGCCCAAGCTTCATCTTGCTTAACTAAAGAGCCCAGATGCTTAAACTGGGCTTTTCAAAACCTAGTAACAAGGCTTGTGCTCTCAAAATTTTTTCTAGATTATTTCTAATTTAAAGTAAGCCTTTTTAAAAGAATGGCATACTATTGACTCTGAGCAGGTAAAAACAGAAGTTAAAGTTACAGAAGGGCCTGCATGTGTTCAAGGGGATTCAATCACAACTTTTTCCTCTGTTAACTCCATTCTTGTCCTCTAA
Seq C2 exon
AAATAGACCAGCCTGGCAGTGTAGATGAAGAGGGGCTGATCTTACTGGAGCAGAAGCTTTTTCGAGCCAAGACCCAGATCAACAGCCAGCTGCGGCCGCTGATGTCAGAGCTGGAGGAGAGAGTGCGTTGGCAGAGGGGCCACCTCCACTCACTGGAGACAAGCATAGATGGCATTCTGGCTGATGTGAAGAACCTGGAGAACATTCGGGACAACCTGCCCCCGGGCTGCTACAATACCCAGGCTCTTGAGCAACACTGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000000793:ENSBTAT00000061289:22
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.029 A=NA C2=0.093
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development