BtaINT0086247 @ bosTau6
Intron Retention
Gene
ENSBTAG00000006214 | LOXL2
Description
lysyl oxidase homolog 2 precursor [Source:RefSeq peptide;Acc:NP_001092523]
Coordinates
chr8:71304333-71305682:-
Coord C1 exon
chr8:71305663-71305682
Coord A exon
chr8:71304508-71305662
Coord C2 exon
chr8:71304333-71304507
Length
1155 bp
Sequences
Splice sites
5' ss Seq
TATGGAAGA
5' ss Score
-4.11
3' ss Seq
TGATCATGCCTTCCTTTCCCTCC
3' ss Score
-7.26
Exon sequences
Seq C1 exon
ACACCAGGGACCAGTTTTAT
Seq A exon
GGAAGACAGTTTTTTCCACCAACCAGGATGGGTTGGGAGGGGGATAGTTTCTGGATGATTCAAGCATTACCTCTATTGTGCACTTTATTTCATTATTATTACCTTGTGATATATAATGAAGTAATTATACACCTCACCATATTGCAGAATCAGTGGGAGCCCTAAACTTGTTTTCCTGCAACCAGACTGTCCATCTGGGGGTGATGGGAGAGTGATGGGGAGCAAATATAGATGTGAAGCTTCGCTTGCTGTCCCCCTGCTCATCTCCTGCTGTGCAGTCCAGTTCCTAACAGGCAGGAGTGGAGGGGGTTGGTTGGGAGCTCCTGATGTCAGGGATAAGAAAGAGGGCGATGCTGACGCTCGCTCCTAGATTTCTGGCTTGTCTAACAGAATAGATTCAGGATCAGCAAACTATCTGTTGCAGTGCAAATCCATCCCTCTGCCTGTATTTGTAAATATGGTTTTCTGGGCACACAGCTGAGCCCCGCTATTTACATACTGTGGTCCCTGCATTCACCCTACGCGGTTTGCTGCCCCTGGGGCAGGTGGTAGTGCCTTTCATTGAAACAGAGAATGAGGGGGAGGTAGAGCACAGGTTTAGGTGTAGAGAGAAAAAGAGGACCAGTTAGATTTGGGGTCTCCGAGGTGCCAGGTGGGACTGTCAAGTAAGAGTTCTTCTGGAAAGGACAGCAGGGGGTGTTGTGGGAGGAGATGCAATCAGGAGCTGGAACTGGGGTACAGGAGAGGGTGTGGGGAGGAGAAAATGGTCCCAGAAAGAATCGGGGGATTCTACCATTTTAAGGCTCCTTATTGCCTCTTTCCAAGTATCTGATCTGAGACCCACCCCCCTGGTGGGCTCATGGGAAGTGGAGGCAGATTCTACAGTGAGATCGGTAGGTCTATAGTGGGGTCAGTGGGTCTCCCCGGCTGTATTGGCATCTAGGGTCCTAGGATGGCTGCAGTAGGGCAGGGGAGGGGCACCTAATGCAGAAGACCATGCTGGGCACGATGCCCAGCACACAGCAGGTTCTCAGTAATGCCAGCCTTCTGTGTCGCAGGCAGGACCCCCTGCCTTGGGGAAATTGAGACTGAAGGCAGTACCATAGTGGGGCATCAACCTGCCTTCCCCTCCCAGTGATCATGCCTTCCTTTCCC
Seq C2 exon
TCCACAGCTGCGCCTGAACGGGGGCCGAAACCCCTACGAGGGCCGAGTGGAGGTGCTGGTGGAGAGGAACGGGTCCCTCGTATGGGGCATGGTATGCGGCGAGAACTGGGGCATTGTGGAGGCCATGGTCGTCTGCCGGCAGCTAGGCTTGGGGTTTGCCAGCAATGCCTTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000006214:ENSBTAT00000008159:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0053013=SRCR=PU(48.6=88.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]