BtaINT0086937 @ bosTau6
Intron Retention
Gene
ENSBTAG00000004555 | LRP2
Description
low density lipoprotein receptor-related protein 2 [Source:HGNC Symbol;Acc:HGNC:6694]
Coordinates
chr2:27053868-27057531:+
Coord C1 exon
chr2:27053868-27053996
Coord A exon
chr2:27053997-27057399
Coord C2 exon
chr2:27057400-27057531
Length
3403 bp
Sequences
Splice sites
5' ss Seq
GCAGTAAGT
5' ss Score
9.07
3' ss Seq
GGTGGGATTTTGCGTTTCAGATA
3' ss Score
7.06
Exon sequences
Seq C1 exon
GTGTAGAACCGACTCCTAGACCTTGTACACCAGATGAATTTAAGTGTAGCAATGGGCGTTGCATTCCACAGCACCGGGTGTGTGATCATGTTAATGACTGTGGTGACAATTTTGATGAGACGGGATGCA
Seq A exon
GTAAGTAAATAATTATTTTTGTACTTCATGGTAGTAACTCAGGTTACCTTACTGAAAAACTTGCAATAACATAAAGTAAATGGTAACCACATTTGTCTTTAGTTTACATGTTGTGTTTCTTTATTGAACAGTTTTTCTATACCAGACATTGTGCTGAATACTACATGAATACTAAATAGGACTATTTCATTTTATCCATGTAACAATCCTGTGAGTTAGGTATTGTTTGTCTCTCTGTCACTCTCTTTTAAACAAATGAGGAAACCACCCTACAGGTTAAATAAATTGGCTGTGTCTTCCTGTCATTAAGAAATTGAGTCAGGATTTGAACTCTGGTCTCCTTTAACTGAAAGGCACAGCCTCTTCCCAGTTCACTAGGTGGCTGTCAGCACCTTAAAGCTATTTATTTTGTTTCTAAATTTGCACATTTTTTTCGTCTTAAGCCAAATGCAGTATCTTTAGCACAGAGGGGAAGAGTAGTTGGTAAGAATGGAAATGTCAGGACATGCTTATGGTGCAGTGGTTAAGACTCTGTGCTCCCAATGCTCCCAGTGGGGCCTGGTTCAATCCCTGGTTGGGGAACTAGATCCCGCATGCAGCAACTAAAGACCCCATATGCTGCAACTAAGACCTAGCACTGCCAATAAATTAAAAAAATATATATTTTTAAAAGAATAGAAATGTCACAGGGGACCTTGGAAGGAACACAGATTTTTAAGAGAGGATTTTTGTGTAGGAAAGGTATGATGTACACAAACAAGGGATGATTCTAGCTTAATGGAAAGTGAATGTTGCAATGGCAGGCTAATAATTTGCCCTTTGGTAGTCCTGTATAGCGTTTGTGAAATGCTTTCACATACATTCTTTTTTTGTATATATAATGTTTATCTGTTTATATATTTTGGCTGCACCAGGTCTTCCTTTCTGTGCGGGGGCTTTCCTCTAGCTGTAGGGAGAGGGGCCCTCTTCCTTGCAGCGTGGGGGCTTCTTGTTGCAGTGGCTTCTCTTGTGGAGCACGAGCTGTAGGGTGTGGGCTTCACTAGTTGAAGCTTCCAGGCTAGCACACAGGCTCAGTGGTCGGCTGTGGCGCATGGGCTTAGTTTCTCCACCGTATGTGGGATCCTCCCCGACCAGGGATTGAACCTGTGTTTCCTGCATTAGCAGGAATGGGTTCTGCACCATTGAGCCACCAGGGAAGCCCCCCATACATTCTTTAGTTTGTTACTCAAATTAGCTCCAGGGGATTACTGCCATTATGTCTAAAAGAAAGCTCAGAGAGCTTAAATAACTTGCTTGAGGTCACACAGAGGGGCAGGGGCCGAATTGGAACCGTCCTGGGACTCCAGACTGGAAGAACTGGCTCCCACTTCCTCTGCCACTAACTGTGCCACTTAGAGTACGTACTAACATCACCAGGCCTCAATTTCTTTTTAGGAAAAAGGAGGGAGTTCTTCAAACCCTGCAAGTCTGGACTTGGTAACATTAGTTAGCTCCACATGCTTCCAACTTCCTGGGCTTTAATAGCCTTTTTCTGAGGCCCCTCAAGGATTTCCTGGCAAATTTTTCTCCTGTGTGGGTTACAAAGGAAGATGAAGAACCAACCATATTGAGTTGATTTGCCATTTGTTTCACACACTTTATCAATAGGATTGGACTTTTTGACATAATAATGTGATTTAAATTAAATATTTAAAAGGCATAAACATGAGGGAATTTGCAGAACCAAGAAGTTGATTTGGGTTTGATGCCTGGAGACTAACTGATAATGTGAATGGTTCCAGGACTTTGGGGATTTCCAAGTTAGGCTTGGATCAAGCTTTGGTTTCTTTTGCAGTTGCCTGTGCAAGTTAAAAGGCTTAAAATCAGCCATAGTCCCTGTTCTTTTTAAGGTAACTTCCTTGCTGAGAAATTGTTTATTTATATTTTTGGTTGTGCTGGATCCTCATTGTTGCGGCGATTAGGGGCTACTCTTGTGGAGCGTGGGCTCTAGGCTCGCAGGCTTCAGTAGTTGTCGCTCGAAGGCTCTAGAGCACGGGCTCAGTGGTTGTGGAGCCTAGGCTTGGTTGCCCCATGGCATGTGGGATCTTCCTGGACCAGAAATCGAACTGGTGTCTCCTACACTGCAAGGCAGGTTCTTCACCATAGTACTTCTAATTCAAATGACATTGCGTTAAAAGCAGGGTTTGTTTAAGGGAACTGGGTAGCCCAGGCAACGGCAACCCACTCCAGTACTCTTGTCTGGAAAATCCCATGGACAGAGAAGCCTGGTAGGCTGCAGTCCATGGGGTCGCTGAGGGTCGGACATGACTGAGTGACTTTCACTTTTCACTTTCATGCATTGGAGAAGGAAATGGCAACCCACTCCAGTATTCTTGCCTGGAGAATCCCAGGGACAGAGGAGCCTGGTGGGCTGCCGTCTATGGGGTCGCACAGAGTTGGACACAACTGAAGCGACTTAGCAAGCAAGCAAGCAAGCAAGGTAGCCCAGGCATTAATCTGGTATGGAAGCAACATTTCTTTTCAGATATTAAGTGGATCTGTGATGGAATTCAGTCTTACTGCATTGGGCTACTTTGACTAAGATATAGAATTCTCATTTTAAATACCAGTTCTTGGTGCTGCTCATCCGCTTGCTTTCCTTTTCATTTCCCTTTCTCCTCCTTTTCTTTTAAACAGAATCAATGCCTTCTATTTATATGTGTGTGTATACATATGCTATATATACATGTATACACACATGAGATATATATATTATATATACATCAATATTTATATATATATATATATAAAATTTGAGCTTCCCAGGTGGCACTAGTGGTAAACAACCTGCCTGCCAATGCAGAAGATGTAAGGGATGTGAGTTTGATCCCTGGGTCAGGAAGAGCCCCTGAGGAGGGCATGGCCACCTACTTCAGTATTCTTACCTGGAGAATCCCATGGACAGAGGAGCCTGATGGGCTACGGTCCATAGGGTCACAAAGAATCAGACAGTACTGAAGTGACTTAGCATGCATGCACCCAAATATTATTTATATATTGATATCATTGTATAATAGTAAGATAGTGGAGCAGGTGGTGATGGTTGTAAAGAGTCCCTGGCTTTTTGATTCTGTCCAGAAATGGATGCTCAGAGGATGATCATGGCAGTGCTGAGTATAATCAGAAAATTGCCTCAAGGATCTAACATTACATATATTTGTACAAATGGAATTCAGGGCATTGGCAGATATACCTGTAGAGAGGTCTCTGATACTCAGCAAAACTTATGGAAAGGGGGCATCTCAAGACTTTCTGTTCTCTGATGGCCATCTGTAGGTGTTCTTCTGATAGGCCACTTGAGTGTTCACTTGTGCTTCATCTGCTTTGTACCTTTCATTTGTAATGGTGGGATTTTGCGTTTCAG
Seq C2 exon
ATACAGGAAAAGACAGATCATGTGCTGAAAATCTGTGTGAACACAACTGTACCCAGTTACGTGAAGGAGGATTCATCTGCTCCTGTAGACCTGGATTCAAACCCAATAGTATTGACAGAAACCTCTGTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000004555:ENSBTAT00000005988:63
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0005713=Ldl_recept_a=PD(0.1=0.0),PF0005713=Ldl_recept_a=WD(100=84.1)
A:
NA
C2:
PF146701=FXa_inhibition=PU(88.1=82.2),PF0764510=EGF_CA=PU(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]