BtaINT0087027 @ bosTau6
Intron Retention
Gene
ENSBTAG00000011761 | LRP6
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1MDE1]
Coordinates
chr5:98130065-98131213:+
Coord C1 exon
chr5:98130065-98130249
Coord A exon
chr5:98130250-98130886
Coord C2 exon
chr5:98130887-98131213
Length
637 bp
Sequences
Splice sites
5' ss Seq
TTGGTAAGT
5' ss Score
10.47
3' ss Seq
TGCTGCCTTTCTGAAAATAGGAC
3' ss Score
7.37
Exon sequences
Seq C1 exon
ATTTATGTATTGGACCGAATGGGGTGGAAAACCTAAGATAGACAGAGCTGCCATGGACGGAAGTGAACGTACCACGCTGGTTCCCAATGTGGGGCGGGCAAACGGCCTGACCATTGACTATGCTAAAAGGAGGCTTTATTGGACAGACCTGGACACCAACTTAATAGAGTCTTCAAATATGCTTG
Seq A exon
GTAAGTTGTATTCTTCTGTTTTGTTCAGAGAGAGAATATATAATCCTTTCTGTGCAAAAATCAGTGGCTGCTGTTTACCATAGGTTAGATATGATACTGTTCATAAAACTTCATATGAATGTCTAGGTTCATCCTCTGTCTCACATTGTATCCTATTCATTAATAGTGGGCCAAGGACTTGTATTCATATCTCTTTAATATGTGGAAATTTCATTACTGTTGGGCTTATAATAAAATTTATAACTCCCTGGATATTTCTGAAGTGACTTTTTGTAGCAGTAGAATACAATATATACATTTCCATCTTTTTATGGAAGGAAAAAGAGTTGAACTGTAGACCTTTATGGAGGGAAAATAACACCACAATCAAAATAGGCCATCTACATGAGTTTAAACAAACTCAGTGAGTTTTAGAACAAAAATTAGTTTGAGGTGTGGGGTCAGACTGTAGATAGATTGATTTCAGAAGACTTGTCTGGTTTAAGAATTGCTTTTGAAGGAATTTTTCTACTTTAAATTGCTTACAAAAGTAATGTTTTAAATGTTACCTTTTCTTTTTCTTTGCCAACAAGACTCTCACTTTGTCACATATTACATCTTTCTGCGTCTCCCCTGTCTGCTGCCTTTCTGAAAATAG
Seq C2 exon
GACTCAACCGTGAAGTTATAGCAGATGACTTGCCTCATCCTTTTGGCTTAACTCAGTACCAAGATTACATCTACTGGACGGACTGGAGCCGACGCAGCATTGAGCGTGCCAACAAAACCAGTGGCCAAAACCGCACCATCATTCAAGGCCACTTGGATTATGTGATGGACATCCTCGTGTTTCACTCCTCACGGCAGGCAGGATGGAACGAGTGTGCTTCCAGCAACGGGCACTGCTCCCACCTCTGCTTGGCCGTGCCAGTTGGAGGTTTCGTTTGTGGATGCCCTGCCCACTACTCTCTGAATGCTGACAACAGGACTTGCAGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000011761:ENSBTAT00000061164:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.063 A=NA C2=0.027
Domain overlap (PFAM):
C1:
PF0005812=Ldl_recept_b=WD(100=65.1),PF0005812=Ldl_recept_b=PU(51.4=30.2)
A:
NA
C2:
PF0005812=Ldl_recept_b=PD(45.9=15.5),PF0005812=Ldl_recept_b=WD(100=37.3),PF146701=FXa_inhibition=WD(100=33.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATTGGACAGACCTGGACACCA
R:
TTCAGAGAGTAGTGGGCAGGG
Band lengths:
352-989
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]