BtaINT0087032 @ bosTau6
Intron Retention
Gene
ENSBTAG00000011761 | LRP6
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1MDE1]
Coordinates
chr5:98148436-98150983:+
Coord C1 exon
chr5:98148436-98148645
Coord A exon
chr5:98148646-98150857
Coord C2 exon
chr5:98150858-98150983
Length
2212 bp
Sequences
Splice sites
5' ss Seq
ATAGTAAGT
5' ss Score
8.65
3' ss Seq
TCTTTCCTCTTTTCTTGCAGGAC
3' ss Score
13.05
Exon sequences
Seq C1 exon
GGGCCAACCGAATAGTATTAGAAGACACCAACATTCTACAGCCTGTGGGACTGACTGTGTTTGAAAACTGGCTGTACTGGATCGATAAGCAGCAGCAAATGATTGAAAAAATTGACATGACAGGTCGAGAGGGTAGAACCAAAGTCCAGGCTCGAATTGCCCAGCTTAGTGACATTCACGCGGTAAAGGAGCTGAATCTTCAGGAATATA
Seq A exon
GTAAGTGCTGATGATGTATTGCTAGTCCCAAGATTCATGTTTGTTATTAGAAGGGACAAAAATTAAGATGTTGTGTGTCTTCTATTTTAAGATTTTCATACACTTGTAGTTTTGCCATTTTTAAAAAGTCTTCATGTCTTTAAAACCTTAGACTCGCCTGGAAATTTTTTCATATTAAACTTGTTTTCCCTATAAAACAAGAGTTAGAGAAAGAAACGGTGTGTCTCATTTTCAAAAATCTCCCCACCCAGGAACAGCAAGGACTTGCTTTTCATGTTTTCTCTTTCTCTCCTTCAACGTTTCAAGAATACTGGTGTAAAGCCTGTATTAATATTTCTTTTGTTTCACGTACATCCCCATGGTTTCAACAGAAGCAGAAGTTAACATTTATATAATGATGAATATAGTTATGAAAATAAACCTATTCTTTGGCAAAAACAAAACAAACTAAAAATTAGTGTATAAACTTAGAGAAGACTATGCTTAATAAGTGCTTGCTTTTTCCCCTTTTGGTTAAGTTTTTCAATTCACAGCTTAGGAAAGTGGCCATAAATTATTGAAAACTTAAAAATGACTAGTCATCTTGGCTTAGTTAATATGTGTTCATATAATACTATTAACTCTATTAATATAGTATTAATATTAGAGTTAGTATTAATATTTTAGTATCAACATTATTAATAAGTTAACATTAACAGTAATTAATACTATTAACTCTATTAATACTGTTATATCTCTCATCAGATGTACCCTCCCAGCAATCACTACTGTAGGTCTTACACAGTTATATCAGGAATGCAGATGTGAAAATGGAGGACTAGTGAGAGAAGTATTCACTCCTGAACTTCTCAGCACAATGTTTTCCAGTCAAATTGGAGTATTTAAGAAGGAAACAGGAATGAGAACACCATAGCTTGTTCAAGTCTCTATTGTGTTGTCACTGTTCATGAACTTAGAAGTTAATCAGAGGTATTTGAGATTTAATAGTTAGAATTGTCATTCTATGTTATGATGTGTAATTCATGCTGAGTGTTTAATAGAAATAAGGTAGAGATGATGTAATGGTTAAGTATTCAGTTGATACATGAGCTTTTTATGGCAGAAAATCTATGGATGTTTTCAGAATTTCAGGGGGAGTATCTTTTTTATAGGTCAACACTTAAATATGGTTTATATTTAGAAAAACTTTATTTTTCAAATAAAGTTTCTAAAAACATTAAAGAAAAGGAGATTGTTTATCAAGAGTCTCTTGGAATTAAAAGGTTGAAAAACACTGCTGTACAGGTTGTAGATTCTGATACGAGGACTGATGTCTGCTTTGGGACATCTCTGTAGTGTGACACCTCTGCTCGTTTGTGCATAGCTGACTCTCCATCTGTCAACACACCCTGAAGCAGGACTGATGTGTTACTGACAGAGTCAGATAATAAACGGGTGGCCACATTTGATGTTGGTATTCTGGGATGATAGCTGTCAAGTTGCTTTTGACGTGAGCTAAGTAGAAAAGTCAAAGCAATGATTTCATTAAATATAACTTATGAGGCAGACTTTGAAATGTGCCTGACAGTGTATTTATTTAGTTAACCCAAGTAGGAAGAAATCAGACGTTTGTAATATTGCAAGTTCTTTTGCGGTTGACCAAGCAAATAATTTTGATGGTCTCTGAGTGGTTGAATTCATGTGAACTTGTTTTTTCTTCTAACAGCTCTTAATTTTTAGCAGACTCCTCCTTAGAATACACTTTTTGAGCAAAATCACCATGTCTCTCAGAAAGATAGAATTTCTGAGTTAAAAACTCTTTAGAAGAATTTTTATATTTTAAACAGAATAAGATCCAGGTTTTAGCATTCTCCCCAGCAATTTTTTTTACTCTGAATAATCAGCTTTTCTTACTCACAAAAATTAACATGAGCTGTACAATTACCTTACTTTAAATACTTTAAAATATTTTATGTATAAATATGTAAAGACAGTGGCTATATAAATACTTTGTGTCTTAAATTGTCCTTGTTTTCTTGTAGATTGTGTAGAGATGGTGTGAGTAATTATATTCAGTGGAAATAAAGTCCAAAGGAATTTTGAATTTGATTTTCTTGTTAACTCATAAATAATTGATTTTGGCTGGGCTTTTCTTACTCCCTTCCTCCCTTGCTATTCTTTTCCCTTTCTTTTTTCTCTCTCTCATTCTCTTCTCTTTCCTCTTTTCTTGCAG
Seq C2 exon
GACAGCACCCTTGTGCTCAGGATAATGGTGGCTGTTCACATATCTGTCTTGTAAAGGGAGATGGTACTACAAGGTGTTCTTGCCCCATGCACTTGGTTCTTCTTCAGGATGAGCTATTATGTGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000011761:ENSBTAT00000061164:15
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.028 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0005812=Ldl_recept_b=PD(51.2=29.6),PF0005812=Ldl_recept_b=WD(100=52.1)
A:
NA
C2:
PF146701=FXa_inhibition=WD(100=86.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]