BtaINT0087034 @ bosTau6
Intron Retention
Gene
ENSBTAG00000011761 | LRP6
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1MDE1]
Coordinates
chr5:98158732-98159942:+
Coord C1 exon
chr5:98158732-98158968
Coord A exon
chr5:98158969-98159831
Coord C2 exon
chr5:98159832-98159942
Length
863 bp
Sequences
Splice sites
5' ss Seq
AAGGTATCC
5' ss Score
8.33
3' ss Seq
TTATATTTTTCCCCCCACAGTAC
3' ss Score
9.6
Exon sequences
Seq C1 exon
AACCCCCAACATGTTCTCCTCAGCAGTTTACTTGTTTCACGGGAGAAATTGACTGTATCCCTGTGGCTTGGCGGTGTGATGGGTTTACTGAATGTGAAGACCACAGTGATGAACTCAATTGTCCTGTGTGCTCAGAGTCCCAGTTCCAGTGCGCCAGTGGACAGTGTATCGATGGTGCCCTGCGATGCAACGGAGACGCGAACTGCCAGGATAAGTCAGATGAGAAGAACTGTGAAG
Seq A exon
GTATCCGCAATTCCTAGGCCTGGTTACAGATTTCCCTTTTCCATTAAGTTGTTTGAAATTCAGAGTTTTGCTTTGGCTCATTCAGTGGTAGATTTGGGGTTTTTCAAGTGTGCTTGACTTTATTATTTCTAAACATAGTAGCATGTTCTAAATTGTCTTAATTCTCTTAATGTGTGTAAGATTTATACACATTAATAAGCTTTGCAGTTGAGAAATGACACCAAAAGATTAGCCCTTCAGTATGTAAAAATGGTCCTTGTTTGCAGTGAGCTCTGAATGGGGCTTCCCTGGTAGCTCAGCTGGTAAAGAACCCGCCAATACAGCAGACTTGGGTTTGATCCCTGGGTCGGGAAGATCCCCTGGAGAAGGGAATAGCTACCCACTCCAGTATTCTTGCCTGGAGAATTCCATGAACAGAGGAGCACGGTGGGGTACAGTCCATGGGGTCGCAAAAAGCTGGACATGACTGAATGACTAAGCACACACACATGACATATTTATTAACAACATAAAGTAATTTCATGTTTTCTTCTCATCCACTAACTTTTAACAGAATATAAAACAACCACAACAAAAATATTCTCTGGAAATCTTTAGTGTCTAGAAATGCATGTAGAATTCTTTTAATCCTTAACAGAATTGTTAGTGAAAGATGGAATTTATAAAGGACAAAATAGGAAGTTTCTTGCTAGATTGCTTTTTCTTCTCTTTTCTGTCTCTCAGTTGAAATCCCCAGAGAACTATTTGTAAGTTTTCTCTAAAAGTCTGATTTTTCATGTGTGCCCAGAATGTTCTCTTTGACTTCTGCCAGACTTTACACGATAGCAAAACTAAGAAAACTATTTATATTTTTCCCCCCACAG
Seq C2 exon
TACTCTGTTTAATTGATCAGTTCCGCTGTGCCAATGGTCAATGCATTGGAAAACACAAGAAATGTGATCATAATTTGGATTGCAGTGACAAATCAGATGAACTGGATTGTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000011761:ENSBTAT00000061164:17
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0005713=Ldl_recept_a=WD(100=48.8),PF0005713=Ldl_recept_a=WD(100=46.2),PF0005713=Ldl_recept_a=PU(0.1=0.0)
A:
NA
C2:
PF0005713=Ldl_recept_a=WD(100=97.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCCCCAACATGTTCTCCTCA
R:
TCCAGTTCATCTGATTTGTCACTGC
Band lengths:
342-1205
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]