BtaINT0087044 @ bosTau6
Intron Retention
Gene
ENSBTAG00000011761 | LRP6
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1MDE1]
Coordinates
chr5:98123194-98125971:+
Coord C1 exon
chr5:98123194-98123410
Coord A exon
chr5:98123411-98125681
Coord C2 exon
chr5:98125682-98125971
Length
2271 bp
Sequences
Splice sites
5' ss Seq
TTGGTAGGT
5' ss Score
7.03
3' ss Seq
ATAATGAATTTGTATTTTAGGTT
3' ss Score
9.13
Exon sequences
Seq C1 exon
GTTATGAATACCGATGGGACTGGGAGACGAGTGCTCGTGGAAGACAAAATCCCCCACATATTTGGGTTTACCTTGTTGGGTGACTATGTCTACTGGACTGACTGGCAGAGGCGGAGCATCGAAAGAGTACACAAACGAAGCGCAGAGCGGGAAGTCATCATCGATCAGCTCCCTGACCTCATGGGCCTGAAGGCCACGAATGTTCATCGAGTCATTG
Seq A exon
GTAGGTAATTTCACAGTTCTCTTAGAGGATGAACCAGGAATGAGAAAAGATATAGTTAGCAGCCTATAAAGTCAGCAGTGTAAATTGTTGATGTTTTGAGTGGATGTAAAAATCATCTGTTAAGCTTTCTGTAATGAGAAATGGACCTTTTTTTTTCTTCTCTCTTTTAAGGAGATTATTTAATTTGTTGAAGCTCACGAAGTTAATAAATTCTTTGTGGTACAAGTACATTTTACATTTTTCTTAAAAATTTGTTGCCTTTCACTTCATATCACATGATGTTTCATAGTGGCTATGTCAAGGAAGACAGTGAACAGTTTTTAGACAGTTACCTTCTTTCCAAGGCTAATATCAGTCAACTTCCTTCCACATCTCACGGTCAAACCCAAATAAACATCCCAGGAAGAAATACTCCAAATCGCTTTCTTCTGGTTCCTGAAACCTCCAGACCAGTTTTCAGCATATTGCCAAGTTCAGTGATACTTTTGGATGACCCAGTGCTGGGTACCATCTAGGTATCCATGATTAATTTTTGAATCAAGAAGTTTCTTTAAGTGTTTACCCAGGGACAAATGAGAACACAAGTCATTGGATTGATTGGCAAGGATGGACCTTTAAATGTTGGTTCAATACTGGCCTCATAGTTTGAATTGAAGGGCTAAACTTAATACCCACACACTGTCAGAAAAAGAACTTCTATTGTATGAATAATGCAGTTTGCTTAAAGCCTCCTATGGGTACACAGGAAAATAATTTTGTCATACGTTTTTTCCCAGTTGATCAGCATAAGAGTTGACCTGCTCCGTTTTCAGTTCAGTTCAGTCGCTCAGTCGTGTCCAGCTCTTTGCGACCCCATGAACCGCAGCACGCCAGGCTTCCCTGTCCATCACCAACTCCCGGAGTCCACCCAAACCCATGTCCATTGAGTTGATGATGCCATTCAACCATCTGATCCTCTGTTGTCCCCTTCTCCTCCTGCCCTCAATCTTTCCCAGCATCAGGGTCTTTACAAATGAGTCAGCTCTTTTCATCAGGTGGCCAAAGTATTGGGAGTTTCAGCTTCCAACATCAGTCCTTCCAATGAACACCCAGGACTGATCTCCTTTAGGATGGACTGGTTGGATCTCCTTGCAGTCCAAGGGACTCTCAAGAGTCTTCTCCAACACCACAGTTCAAAAGCATCAATTCTTTGGTGCTCAGCTTTCTTTATAGTCCGACTCTCACATCCGTACATGACCACTGGAAAAACCATAGCCTTGACTGGACAGACCTTTGTTGGCAAAGTGATGTCTCTACTTTTTAATATGCTGTCTAGGTTGGTCATAACTTTCCTTCCAAGGAGTAAGCATCTTTTAATTTCATGGCTGCGGTCACCATCTGCAGTGATTTTGGACCCCAAAAAAATAAAGTCTGACACCTTTTCCACTGTTACCCCATCTAATTGCATGAAGTGATGGGACTGGATGCCATAATCTTCGTTTTCTAAATGTTGAGCTTTTTTTTTTTTTAATTTTATTTTATTTTTAAACTTTACAATATTGTATTGGTTTTGCCAAATATCGAAATGAATCCCCCACAGGTATACATGTGTTCCCCATCCTGAACCCTCCTCCCTCCTCCCTCCCCATACCATTGCTTTAAGCCACCTTTTTCACTCTCCTCTTTCACTTTCATCAAGAGGCCCTTTAGTTGTTCTTCACTTTCTGCCATAAGGGTGGTGTCATCTGCATATCTGAGGTTATTGATATTTTTCCTGGCAATCTTGATTCCAGCTTGTGCTTCCTCCAGCCCAGCGTTTCTCGTGATGTACTCTGCATATAAGTTAAGTAAGTAGGGTGACAATATACAGCCTTGATGTACTCCTTTTCCTATTTGGAACCAGTCTGTTGTTCCATGTCCAGTTCTAACTGTTGCTTCCTGACCTGCTCCATTTTCAGCTTGGGCCAATTCACCGCTCCTGGGAGGTCACCATACTGCCACCAACTTAGTCAGACACCCAGTCAGCCTAGTGTAGCTCCAGTCAGAACTCCTGGGCTGGAACCATCCTGCTCAGCCTCTGGTGTAGCTGGGACTGCAGGCCTGCACCACTGTGCCTGGTCTTTTATTCCCTGTTAATCCTCATAATGCTTGTTTGTGAGATTAGAATTGAAACTCTAGATTGGGGAGCAAATATAATCCTATGTCTTTGTCAAACAAATGCTTGGTCATTTAAATTGAAAATGTGTTGATTATGTCGATTGTGTGTCCTTTTATAATGAATTTGTATTTTAG
Seq C2 exon
GTTCCAACCCCTGCGCTGAGGATAATGGGGGATGTAGCCATCTCTGCCTCTATAGACCCCAGGGCCTTCGCTGTGCCTGCCCCATTGGCTTTGAACTCATCAGTGACATGAAGACCTGCATTGTCCCAGAGGCTTTCCTTCTGTTTTCACGAAGAGCTGACATCAGGAGAATTTCTTTGGAAACTAATAATAATAACGTGGCCATTCCACTCACTGGTGTCAAAGAAGCTTCTGCTTTGGATTTTGACGTGACAGACAACCGGATTTACTGGACTGACATATCACTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000011761:ENSBTAT00000061164:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0005812=Ldl_recept_b=PD(61.5=32.9)
A:
NA
C2:
PF146701=FXa_inhibition=WD(100=37.1),PF0005812=Ldl_recept_b=PU(24.4=10.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]