BtaINT0087878 @ bosTau6
Intron Retention
Gene
ENSBTAG00000021957 | LTBP2
Description
latent transforming growth factor beta binding protein 2 [Source:HGNC Symbol;Acc:HGNC:6715]
Coordinates
chr10:86214096-86214607:-
Coord C1 exon
chr10:86214588-86214607
Coord A exon
chr10:86214136-86214587
Coord C2 exon
chr10:86214096-86214135
Length
452 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGT
5' ss Score
10.86
3' ss Seq
CTTCTCCCGTTTCTGTGCAGGTG
3' ss Score
11.63
Exon sequences
Seq C1 exon
GCGACTCTCAGGCCAGCCAG
Seq A exon
GTAAGTGAGTCATCCCACTAAGGAGCTGGGCAAATGTGGCAGAGACTGGGACCTGGTAGCCCTGAGGCTGCAGGGCAATGTCACATGAGGGAGGGAAGGGAGAACGATCCAGTGTACGCAGGATTTTACTAACAGAGAAGCCAAGGTGGGAGAGTTGATCCCAAGACCCACTTGTACCCTGAAAGAAGTAATAATCGCAGCTCTGGTTTTTCTGGCAGCTACAGTGCAAGTTCTGTCATTTGAGAAGGTCAGCGGAGGGGGGCCCTTCAGAAAGAGAGCAGGAACGTGTCCTTTAGTCCTGGCTGTTGCTCAGACTTTCATCACAGCACATGAGGTCTAGAACTATGTGCTAAGTCACTTCAGTCATGTGATCCTATGGACTGTAGCCCACCAGGCTCCTCCGTCTGTGGGATTCTCCAGGCAGTGAGACGCCTTCTCCCGTTTCTGTGCAG
Seq C2 exon
GTGACAACCAGTGTTACCCAGCTATCCACCTGGGTCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000021957:ENSBTAT00000029274:13
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development