BtaINT0087913 @ bosTau6
Intron Retention
Gene
ENSBTAG00000006747 | LTBP3
Description
latent transforming growth factor beta binding protein 3 [Source:HGNC Symbol;Acc:HGNC:6716]
Coordinates
chr29:44391573-44391970:-
Coord C1 exon
chr29:44391839-44391970
Coord A exon
chr29:44391702-44391838
Coord C2 exon
chr29:44391573-44391701
Length
137 bp
Sequences
Splice sites
5' ss Seq
TGGGTGAGC
5' ss Score
7.23
3' ss Seq
GCCCCCTTCCTCCCGCTCAGACC
3' ss Score
8.16
Exon sequences
Seq C1 exon
ACGTGAACGAATGCGAGGCGGAGCCTTGCGGCGCCGGGCGGGGCATCTGCATGAACACCGGCGGTTCCTACAACTGCCACTGCAACCGAGGCTACCGCCTGCACGTCGGCGCCGGGGGGCGCTCTTGCGTGG
Seq A exon
GTGAGCACGGAGTGGCCGGGGGCGTGGCCGGGGCCGGGGGCGGGCCCGGGGATCGGCGGACCCGAGGGGCTCTCCCGACCGCATGTCACCCCCTCCGCCGCCTTGCATTCCCCTCGCGCCCCCTTCCTCCCGCTCAG
Seq C2 exon
ACCTGAACGAGTGCGCAAAGCCCCACCTGTGCGGCGACGGCGGCTTCTGCATCAACTTTCCGGGACACTACAAGTGCAACTGCTACCCCGGCTACCGGCTTAAAGCCTCCAGACCGCCCGTGTGCGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000006747:ENSBTAT00000008880:13
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0764510=EGF_CA=WD(100=95.6),PF0764510=EGF_CA=PU(0.1=0.0)
A:
NA
C2:
PF0764510=EGF_CA=WD(100=95.5),PF0764510=EGF_CA=PU(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACGTGAACGAATGCGAGGC
R:
GGCGGTCTGGAGGCTTTAAG
Band lengths:
250-387
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]