BtaINT0087918 @ bosTau6
Intron Retention
Gene
ENSBTAG00000006747 | LTBP3
Description
latent transforming growth factor beta binding protein 3 [Source:HGNC Symbol;Acc:HGNC:6716]
Coordinates
chr29:44384465-44387890:-
Coord C1 exon
chr29:44387771-44387890
Coord A exon
chr29:44384594-44387770
Coord C2 exon
chr29:44384465-44384593
Length
3177 bp
Sequences
Splice sites
5' ss Seq
AAGGTATGG
5' ss Score
9.26
3' ss Seq
TGCTCTTCTCCCCCCTGAAGACA
3' ss Score
6.95
Exon sequences
Seq C1 exon
ACATCAATGAGTGTGACTTCCCTGCAGCCTGCATTGGGGGTGATTGCATCAACACCAATGGCTCCTATCGATGTCTCTGTCCCCAGGGGCATCGGCTGGTAGGCGGCCGGAAATGCCAAG
Seq A exon
GTATGGGGGGATTGGCTGAGAACTCCCAAGGAGCAATGGCAGCAAGCAGTCATCTCCTAGACACACTGTTGATTTGTCTTTCCATCCATCCATCCACCCACTCATTCATCTTACTCTTTCACAGAAAATAATATAACAGTAATAATGACAGTAATTAGATGATGCTTATTACTATGTGCCAACTCACCCCTCAATGCATTCATCCAATAAGAGTTTCAGTTCAGTTGCTCAGTCGTGTCCGACTCTTTGCAACCCCATGAATCGCAGCACGCCAGGCCTCCCTGTCCATCACCAACTCCCGGAGTTCACCCAGACTCATGTCCATCGAGTTGGTGATGCCATCCAGCCATCTCATCCTCTGTTGTCCCATTCTCCTCCTGCCCCCAATCCCTCCCAGCATCAGAGTCTTTCCCAATGAGTCAGCTCTTCGCATGAGGTGGCCAAAGTATTGGAGTTTCAGCTTTAGCATCATTCCTTCCAAAGAAATCCCAGGACTGATCTCCTTCACAATGGACTGGTTGGATCTCCTCACAGTCCAAGGGACTCTCAAGAGTCTTCTCCGACACCACAGTTCAAAAGCATCAGTTCTTCAGCGTTCAGCTTTCTTCACAGTCCAACTCTCACATCCATACATGACTACTGGAAAAACCGTAGCCTTGACTAGATGGACCTTTGTTGGCAAAGTAATGTCTCTGCTTTTGAATATGCTATCTAGGTTGGTCATAACTTTCCTTCCAAGGAGTAAGCGTCTTTTAATTTCATGGCTGCAGTCACCATCTGTAGTGATTTTGGAGCCCCCAAAAATAAAGTCTGACACTGTTTCCCCATCTATTTCCCAAGAAGCGATGGGACCAGATGCCATGATGTTTGTTTTCTGAATGTTGAGCTTTAAGCCAACTTTTTCACTCTCCACTTTCACCTTCATCAAGAGGCTTTTGAGTTCCTCTTCACTTTCTGCCATAAGGGTGGTGTCATCTGCATATCTGAGGTTATTGATACTTCTCCTGGCAATCTTGATTCCAGCTTGTGCTTCTTCCAGCCCAGCACTTCTCATGATGTACTCTGCATATAAGTTAAATAAGCAGGGTGACAATATACAGCCTTGACGTACTCCTTTTCCTATTTGGAACCAGTCTGTTGTTCCATGTCCAGTTCTAACTACTGCTTCCTGACCTGCATATAGGTTTCTCAAGAAGCAGGTCAGGTGGTCTGGTATTCCCATCTCTTTCAGAATTTTCCACAGTTTATTGTGATCCACACAGTCAAAGGCTTTGGCATAGTCAATAAAGCAGAAATAGATGTTTTTCTGGAACTCTCTTCCTTTTTCCATGATCCAGCACATGTTGGCAATTTGATCTCTGGTTCCTCTGCCTTTTCTAAAACCGGCTTGAACGTCTGGAAGTTCACGGTTCACCTATTGCTGAAGCCTGGCTTGGAGAATTTTGAGCATTACATTACTAGCGTGTGAGATGAATACAATTGTGCGGCAGTTTGAGCATTCTTTGGCATTGCCTTTCTTTGGGATTGGAATGAAAACTGACCTTTTCCAGTCCTGTGGCCACTGCTGAGTTTTCCAAATTTGCTGGCATATTGAGTGCAGCACTTTCACAGCATCATCTTTCAGGATTTGAAATAGCTCAACTGGAATTCCATCACCTCCACTAGCTTTGTAGTGATGCTTTCTAAGGCCCACTTGACTTCACATTCCAGGATATCTGGCTCTAGGTGAGTGATCACACCATCATGATTATCTTGGTCATGAAGATCTTTTTCGTACAGTTCTTCTGTGTATTCTTGCCACCTCTTCTTAATATCTTCTGCTTCTGTTAGGTCCATACCATTTCTGTCCTTTATTGAGCCCATCTTTGCATGAAATGTTCCCTTGGTATCTCTAATTTTCTTGAAGAGATCTCTAGTCTTTCCCATTCTGTTGTTTTCCTCTATTTCTTTGCATTGATGGCTGAGGAAGGCTTTCTTATCTCTCCTTGCTATTCTTTGGAACTCTGCATTCAGATGCTTATATCTTTCCTTTTCTCCTTTGCTTTTCGCTTCTCTTCTTTTCACAGCTATTTGTAAGGCCTCCCCAGACAGTCATTTTGCTTTTTTGCATTTCTTTTCCATGGGGATGGTCTTGATCCCTGTCTCCTGTACAATGTCACGAATCTCCATCCATAGTTCATCAGGCACTCTATCACATCTAGTCGCTTAAATCTATTTCTCATTTCCATTGTATAATCATAAGGGATTTGATGTAGGTCATACCTGAATGGTATAGTGGTTTTCCCTATTTTCTTCAATGTAAGTCTGAATTTGGCAATAAGGAGTTCATGATCTGAGACACAGTCAGCTCCCGGTCTTGTTTTTGCTGACTGTGTAGAGCTTCTCCATCTTTGGCTGCAAAGAATATAATCAATCTGATTTCGGTGTTGACCATCTGGTGATGTCCATGTGTAGAGTCTTCTCTTGTGTTGTTGGAAGAGGGTGTTTGCTATGACCAATTTACTGAACACCTAATATTTGCCAGGTTCTATGCTATATGCTAGATACTGAGCAATAACCCAGGGTTCCTTGCTAGGAAGACAGTCTCCCCTAGGAAGGAGCCCTGGGTAAATTGATTCTTACAATTCAGAGTGCTAAGCGCCAAAAGAGGTCTGGACTAGTGATTAATTGCAACCAAGAAGTGACAGTTGTATTGGAACTTGAAGTATAAACAGGCTTCCCTAAAGCATAAGTAGATTCCCTAAGCAGAGAAAAACAAAGGATGGTATTTACCAGGCCCAAAGAAGAGTATTTGCAAAGCACAGAGATCAGGAAGCAGAGCTAGTTGTGTTTTTAGGGAGAGTAGATACCTTGGCCTAGACATAGAGCTGAGGGTCTTAGTGGTTTAGAGCAAAGGGTGATGAGACAAAGATACTGGGAGAGCAAACTGAACCCCCAGATGCTGAGCTGAGAGCTAGGGCTTCATTCTGTTAGCGCTTGTGAAGAACAGTGCACTGAATGTGTATACATCGACCCCTGTGCACAGACCCACACGAGTGGCTTTCCTGTTGTGTGTGCTTTGAAGTCAAAGTGGAAATTCAGGTTCTCGGCTTGTGTGAGGCCCTTGAGGCCCACCCCCAGGGAGAGAGGGGCTGGTTTCCCTCTGAGTGATTCTTTCTGCTCTTCTCCCCCCTGAAG
Seq C2 exon
ACATAGATGAGTGCAGCCAGGACCCAGGCCTGTGCCTTCCCCATGGGGCCTGCGAGAACCTGCAGGGCTCCTACGTTTGCATCTGTGATGAGGGCTTCACACCCACCCAGGACCAACATGGCTGTGAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000006747:ENSBTAT00000008880:18
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0764510=EGF_CA=WD(100=95.1),PF0764510=EGF_CA=PU(0.1=0.0)
A:
NA
C2:
PF0764510=EGF_CA=WD(100=95.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]