BtaINT0087919 @ bosTau6
Intron Retention
Gene
ENSBTAG00000006747 | LTBP3
Description
latent transforming growth factor beta binding protein 3 [Source:HGNC Symbol;Acc:HGNC:6716]
Coordinates
chr29:44384000-44384593:-
Coord C1 exon
chr29:44384465-44384593
Coord A exon
chr29:44384168-44384464
Coord C2 exon
chr29:44384000-44384167
Length
297 bp
Sequences
Splice sites
5' ss Seq
AGGGTGAGT
5' ss Score
9.25
3' ss Seq
CTGCTCTCCCCTCCCCTCAGAGG
3' ss Score
10.56
Exon sequences
Seq C1 exon
ACATAGATGAGTGCAGCCAGGACCCAGGCCTGTGCCTTCCCCATGGGGCCTGCGAGAACCTGCAGGGCTCCTACGTTTGCATCTGTGATGAGGGCTTCACACCCACCCAGGACCAACATGGCTGTGAGG
Seq A exon
GTGAGTGCCCTCTCGGCTCCCTCCTCAATCTAGACGCTGCCGTTGGGACTCAGAGTTGGACCTGGTCCCACCCTCTGGAATATGAGGAACAGGAAGAAATTTCTTTTGCCTGGGAGACCCTGGCGGGACCAGACCTGTCAGGCGGCCCCTGAATGCCACACTGAGGATGGAGCTTGGCTTTCACGTGGCAGCTCCAGGAGCCAGGCGATGTGGGGGCACAGAGGGCAGAGGTTGGTGGGCAGTGTGGACAGGCAAAGACACAGTGCCAGACCCTGAGCTGCTCTCCCCTCCCCTCAG
Seq C2 exon
AGGTGGAGCAGCCCCACCACAAGAAGGAGTGCTACCTTAACTTCGATGATACCGTGTTCTGTGACAGTGTTCTGGCCACCAACGTCACCCAGCAGGAGTGCTGCTGCTCGCTGGGGGCTGGCTGGGGAGACCACTGCGAGATCTATCCCTGCCCAGTCTACAGCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000006747:ENSBTAT00000008880:19
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0764510=EGF_CA=WD(100=95.5)
A:
NA
C2:
PF0068312=TB=PU(86.0=64.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACATAGATGAGTGCAGCCAGG
R:
GCTGTAGACTGGGCAGGGATA
Band lengths:
293-590
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]