BtaINT0087938 @ bosTau6
Intron Retention
Gene
ENSBTAG00000004757 | LTBP4
Description
latent transforming growth factor beta binding protein 4 [Source:HGNC Symbol;Acc:HGNC:6717]
Coordinates
chr18:50184442-50185318:+
Coord C1 exon
chr18:50184442-50184636
Coord A exon
chr18:50184637-50185186
Coord C2 exon
chr18:50185187-50185318
Length
550 bp
Sequences
Splice sites
5' ss Seq
CAGGTGTGG
5' ss Score
6.34
3' ss Seq
GTCTCACTGGACCCCCGCAGGTC
3' ss Score
6.62
Exon sequences
Seq C1 exon
GGGCTGCCCCAGGCTCACCAAAAAAAGGGGAGATGATCAGGGACACCCAAATCAAGGTCTCCAATGCTGACACCCCTTCTTTACCAGGCTTTCTGCCCACTCATCGCCCAGAACCTCGGCCTGAGCCCCGGCCAGGCCCTGAGCTTCCCCTGCCTAGCATCCCTGCCTGGACTGGTCCTGGGATCCCTGAATCAG
Seq A exon
GTGTGGTAGAGGGAAATGAGGGCACAGGCAAGAGTTCCAGGGAGGGAGGCTCCACCGTGAAGATTCTAGAATAGAATAGGGATGTGACAGCCAGAGGAGTTAAGAAATTGGTGGGAAAAGATCAAGGTTTGCTGGATGAGGTGGTGTTTACACCAGGGACTGGAGTCAGACAGGCCTGGGTGCAAATTCTCTGTCATTACTGTGAGGATTAAACAACCTGTCTGTGAAGTATCTAGGAGATAGTAAGTGCTCAGTTAATGTGAGACAAGTGATTTTCGTGGAGGACACTAAGAACATATTTCAGGCAGAGGACGGGATTCTAAAGTAAAATATTAAAAAATGGAGACTTTGGGGTGGCAGTACGGGAGGATTCAGGCAGAAGATCTGATGAGAACATCGCATGATAGAGAAGGGCATCAGAGGGAGAAGACTTGGTTTGAGGAGGGACACCCAGGATGGTGTTTTAGGTAGAGGATCTGAGGGAATTGTACTGGGGTGAAAAGGACGGGATTCATACATGGGGGAACCCTGTCTCACTGGACCCCCGCAG
Seq C2 exon
GTCCCTCTGCAGGCGAGTGTCAACGCAATCCCCAGGTCTGCGGCCGTGGACGGTGCATCCCTCGGCCCAGTGGCTACACCTGCGCTTGCGACTCCGGTTTCCGGCTCAGTCCGCAGGGCACACACTGCATCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000004757:ENSBTAT00000065855:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.985 A=NA C2=0.108
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF146701=FXa_inhibition=WD(100=82.2),PF0764510=EGF_CA=PU(0.1=0.0)
Main Inclusion Isoform:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCCCAGGCTCACCAAAAA
R:
TGTGCCCTGCGGACTGAG
Band lengths:
312-862
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development