BtaINT0087961 @ bosTau6
Intron Retention
Gene
ENSBTAG00000004757 | LTBP4
Description
latent transforming growth factor beta binding protein 4 [Source:HGNC Symbol;Acc:HGNC:6717]
Coordinates
chr18:50201723-50202104:+
Coord C1 exon
chr18:50201723-50201734
Coord A exon
chr18:50201735-50201932
Coord C2 exon
chr18:50201933-50202104
Length
198 bp
Sequences
Splice sites
5' ss Seq
TGTTTTCCT
5' ss Score
-32.34
3' ss Seq
AGCCCTGAATAGCACTCCTGGTA
3' ss Score
-10.69
Exon sequences
Seq C1 exon
CATCAGTATTGT
Seq A exon
TTTCCTAGCAAAACCCTAGTGTCCTAGGGGGCTACCATATCCATCTCACAGAATACAAAGCTGAAGCGCAGAGAGGTTAAGTCACCTGTCCAGCTCACACAGCCAACAGTCTCCACTCCGACAGGAGACTCAGCATCCACAATCCTCAGGGGCCAGGGAGGCGGGCACCTGAGTCCCCAGCCCTGAATAGCACTCCTG
Seq C2 exon
GTATCTCCTCTCCCCAGACATCAACGAGTGTGACGAGGCCGAGGCGGCCGCCCCGCTCTGTGTCAACGCGCGCTGCGTCAACACTGATGGCTCGTTCCGCTGTATCTGCCGCCCAGGATTCGCACCCTCACACGAGCCGCATCACTGCACGCCCGCCAGACCCCGGGCCTGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000004757:ENSBTAT00000065855:34
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.180
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0764510=EGF_CA=WD(100=75.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development