BtaINT0088175 @ bosTau6
Intron Retention
Gene
ENSBTAG00000018559 | LYRM1
Description
LYR motif containing 1 [Source:HGNC Symbol;Acc:HGNC:25074]
Coordinates
chr25:18826142-18830437:+
Coord C1 exon
chr25:18826142-18826300
Coord A exon
chr25:18826301-18830344
Coord C2 exon
chr25:18830345-18830437
Length
4044 bp
Sequences
Splice sites
5' ss Seq
AATGTAAGT
5' ss Score
8.62
3' ss Seq
CTCTTTTTCCCTTTTAATAGCTC
3' ss Score
9.09
Exon sequences
Seq C1 exon
ATGACAATGGCAACACGACAAGAAGTTCTTGGCCTCTACCGCAGAATTTTCAGGCTTGCGAAGAAATGGCAGGCTGCATCAGGGCAGATGGAAGACACCATTAAAGAAAAACAGTACATATTAAATGAAGCCAGAACGCTGTTCCAAAAAAACAAAAAT
Seq A exon
GTAAGTAGGCCCCGTTGGAGATTGCAAGGAGGAGAGCAATTCTTGTGGTGTTTGTTCATTTCTTTTCTATCCTATAGTTGAGAGGACTGAGCAGCACAAATTAGAGGGACAGAATGTGGAGCAAGAAAGGGCCAGAGGCACAACCTAGCTGGCTTACCCAACCACTGGAAAACAGAACCCAACCTGGGTTTCTCTCTTTACTTTCTTCAAGTTTCAGTCCAGCTGGTAAGTGGCTCAGCATCCTCAGAAGACTGCGTGAGCCAGGTGACCTAAATCAGTCCAGTGAGAATTTTCAGGGTAGGATCAGTTCCTCACACACTGTGCCTGTTGTCAGTCACTACCACAGGAAGTGCTCAGAGTTGTGTTTGGTTTTTTCAGTTCATAAGCTATTCAGAGCCTCCAAGTATAAACCCATTCAGAGGAAAGAGAATAGGATTAAGGCAAAGGTTCCCTTCATAACTTAGCTTTGAACTCAAGCCTCTTTGGCTAGCAGAGAGGATTTGCCCTTTGGGACCTCAGAATTGGGTAAAATAGTGCCTCCATTAGCTAGCTGAACCCAAATACCAGGGAGCCAAAAACCATTCTAAGAGGCTTGATTTGACAAACCATAAAGTGTTATCTGTCAGCTTCTTGGGAAGACTTTCTGGCTCTAAGCATGGAAAGACGTTTTCAGCTCCTAACTTTTCTTGCCTCTTTCTCATTGATCTCATGGATTCAGTGTTGTCACTGTTCACTTTGTGAAACTTCTGACAATCTACTCTCTTTACTTTTCCCTCTCTGACCCCTGTCTCAGTCTCCTTTCTGCCCTGTCTTTTTCACACACTCTCCCACCAGCTATAAGTGTCCTCTAAAGGTCACCCCTCCATACTGAGGCCCAAAGACCATGGCTCCAGATACCATATCTTGGTCTCTCATCAGCCACCTGTAGGAACTCACCATAAGCATAATAGCCCAAAGCAGAATTCATCTTTCCACAAGAACACCTCCCTTTCCCATTTTGCCCATTTCTGCCATAGCTTCTGCCACTACTTTGTGACCCTTTGCTCTCATTCGTTTATTCAACAAGTAGCTAAGTGTCTACCATGTTCCAAACATCAGACTAGACATCAGGGATATAACTGAGCAAAACCAAGACAGGGTCCCTGAAAGATGTTTCAGAGTTAGATGGAAAGAAGTGTAAAATTACCAGTGGGGTTAAGTGCTACCTGAGAAACCCTCCCAATCTATAATATCCTTCCCTTTTTATAATCCCTGAAGCCTACATGCTTTTAATACCAACCTGCTTGTGAAAGTCCTTTCCTCTCTTCTAACCACCCTCCAACTTCCCCAAACTTTTTCTGATTTTAGCATAGACCATGCATACCACATCAGTATGTGTGTACCCCTTGAGGTCCTGAATAGTCCTTTGAGGATTAGAAATAAAATATTGTAAGTGTTGTTTCTATTTATTTTTATTGCTCCTTTAAAAATGTCTATTATATATATATATATATATATTATTGATTATTAATTTAATAAATTTATAAATACACACATGGAAGCTATGGGCTCAGAATTTTTTTTTTGCCACACTGTGTGGCTTGTAGGACCTTAGTTCCCTGGGACACGGCAGTCAAAGTCCTAACCACTGAACCACCGTGGAATTCTCAGGGCTCAGAAGTTTTTTTATTGAAAGAAGTAGATGATCAAAACTTTGTAGACCACTGACCTATATACCTTTCCCTAGTTAGACAGTCATAATTTTTTTTCCTTATTTGTTTCATTTATGTTGGTATGGTCTCCTTAACCAGATTGTCAGTTCCTTGAGCACATAAACAGTTTCCTATACCTTTATAGTATATCTCATGGCCCTGTCTGTGGTTGTCACTAAATTAATGAGCACTTACAAATACTTTGATTCAATTGATCTTCTCCAGGAAGTCTTCCTCAAGTCCTTTGCCCTCAACCAACCCCATGATGACCATCTACTCTGAATTCCTATATAGCAGTCTGCAGTCATTGCCCTGTTGATTATGTACAGTTGTGCCTTGTCTGTAGCTTCATTTGTCGGATTTGTTCTGCACAGGTAACATCCTTGATAGTTAAAGGCAGGTACCATGGCCTCACGGTGTCTAACCTGGGGATGGGGATATCATAGTAGTACATGACCAGTAAAGCTTTGCAGGTTCAATCACCTAAGGACTACTCAATACCCTTTGAGCTTACAGTTAAGGCAATAATAATCCTTCATTTGCCTCTGCTTGAATTGGCCCAGTGTGGTACGAGCCAGAGAGGTGTATGTGCCAGTCCATGAATGAGATAATGTTGTTGTGTTGGGGGAGGTACATGGGTTTTTTATTTTAAAATATGTACTGTTTTACCATGTTTTAGAAAGGAAACATAATATCAGATAATTTTGTAAGTACTGTACTTAACAGAGTCCATTTAAAGAGAAAGTTTAATATTAGTATAGGTAGTTGTGGAGATGACAAAATCACGCAGGCAGCCTCTGAATGACTGAATTTGGAGAACTCTAACCCAGCTTGTTTAGATGGACAGCTGGAGCCCTAGAAGCCCTCAGTCCCCATATCTTTATTAGGGGCTTCTTTCTCCCTAATCCCTCATGTAGACCTAAGTAGTCTCCTGTAACCTCACTTGCTATAAGAGCTTAATAATAACCCCAAATATATTTCATTAATTGCTCTGACTCCAAATAGGCAAATGAGAACATGGAAATCTACCCCCAAGGTAGACAATCAGAATAGCTTCTGAGAAATACAGAGGTCAGAAAGCTAAGCCTCTGTCCAAAGGGACTCAGCTGTGGTTCTTTTTATTCATTGCAGGTCCTAGAACTTTTCTGTGCTCCAAGAGGACCACAGGACAGGAACACCCTTGGAATTTGCAAGCCATGGTAGCCTGGGCTTCACTGTGGGTGTCATCTGGGGCTGATGCAACCCAGCTCTTCTTTGAAGCCCACTTTCAGACTCTTAGTAGAGTCATATGTTGACTCATTTTCCATCCTCGAAACATTGTCTCCTCATCTACTTCCTGGCTTTCTGTTTTCAGAATGAACTTTTTATTCCTTTACTTGAAATTGGACTACCACAGTTAAACTGTTTGGAAATTTCTAACATCATTTCTTCTCCTCAGTAATAAGCAAACAGTTTACAGTTCAAAATAGGTGGATCATTCTCCAATATCTTACTCAGGGGGTTTCTAGACAGCAATTGCTGAAACACTTCATCTACGTGGGGAGGGTATGAAGAAGCACTCTCATTCTTTGTTGGTAGGAATATAATTTATGGATTGTTCATAGGAATATAAATTGGTACAACCTCTTAGAGGGTAATTTGAATCTGCAGGGACTATATGTAAGAGTTAAAAATACGAGATCCATTGTTTAAAATGGCAAAAGATTGGAAATAACCTAAATGTCCACTGGTGGAAGATTGGTTAAATTATAATGCAGTCATATGTTGGTATTTTGTGCAGCTGTTAAAAAGAATGAAGCAGCTCTGCTGCTGCTGCTGCTAAGTCGCGTCAGTCGTGTCCAACTCTGTGCAACCCCATAGACGGCAGCCCATCAGGCTCCACCATCCCTGGTATTCTCCAGGCAAGAACACTGGAGCAGGTTACGTGTAAATATAGAAGGAACTTCAAGTTGTTTGTGAAAAAGCAGGGTTTAGAGGTTTCATTTTTGTAAGAAAAACTACTAGGTCTTATAGAAGTATACTTATATATGCATAGACTATCCCTGGAAAAACAAACAAACTTCTGATAATTGTCTCTGAGAAGGGGAATTGAGAGACAGGAAGAAGAAGAAAATTTTGTTTTATATTATATCCTTTTATATTATTTGAATTATTTTTACTATGTGCTTATATTAGCTAAATGATTTTTAAAAGTTTTAATCCACAGGAAATCTTCAATTGTTTTTTATTTTTCAAATGACCAATATTTAATTTAGTGGCTGATGAACTGAAAAAATTTAAGAAAATGTGTACCTCTACTTTATGTAGCATTGGAAAGATGCTAACAATCTCATCTCTTTTTCCCTTTTAATAG
Seq C2 exon
CTCACAGACACAGACCTGATTAAACAGTGTATAGATGAATGCACAGCCAGGATTGAAATTGGACTTCATTACCAGATTCCTTATCCAAGGCCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000018559:ENSBTAT00000024700:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0534710=Complex1_LYR=PU(68.7=86.8)
A:
NA
C2:
PF0534710=Complex1_LYR=PD(28.4=61.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]