BtaINT0088176 @ bosTau6
Intron Retention
Gene
ENSBTAG00000018559 | LYRM1
Description
LYR motif containing 1 [Source:HGNC Symbol;Acc:HGNC:25074]
Coordinates
chr25:18830345-18835009:+
Coord C1 exon
chr25:18830345-18830437
Coord A exon
chr25:18830438-18834892
Coord C2 exon
chr25:18834893-18835009
Length
4455 bp
Sequences
Splice sites
5' ss Seq
CCAGTAAGT
5' ss Score
9.09
3' ss Seq
TCATTATTCTTATTATTCAGATT
3' ss Score
8.6
Exon sequences
Seq C1 exon
CTCACAGACACAGACCTGATTAAACAGTGTATAGATGAATGCACAGCCAGGATTGAAATTGGACTTCATTACCAGATTCCTTATCCAAGGCCA
Seq A exon
GTAAGTGTGACTTCAGTTAACATGTGGTGTGTACCTATCCTTGTCAACCCAGGTATTTCCAAGAATATATACCAAGAGGACTCATGCTTGCCCAAAAGCCTAGAGCCCCTGTAGGAGGCATGTTGGAAATAAGTTATGCTTGCATGGCCACCAACCCGTTACAACAAGCTAAAATGTCAGTGAATGCCTGACTTCTCCTACTTGTACAACTTTCCCCTAAATGGAAAGGAAATCCAGCTCGCATTTATATAGTTTTCTAACTTTTATCTTTTTCATGGAAAGATTTTTATTTCTAGTATTTTAAAAAACCGGTTTATTGTTAATAAATAAAATTCAGGGTTTCCCTGGTTGCCCAGTGGTTAAGAATCCGCCTGCCAATGTGGGGGACATGGGTTCAATCCCTGATCCAGGAATATTCTACATGCCACAAGACAGCTAAGCTCATACATCACAACTACTGAGCCCTCACTGTAGAGCCTTCGAGCTGCAACTACTACACCAGGGTGCCCTAAAGCCCGTGCTCTGCAAGTGGAGATGCCGCCACAGTGAGAAGCCCGTGCACCACAACTAGAGTAGCCCACATGCAGCACTGAAGACCCAGCACAGACAAATGTAAATACATAATTTTAAAAAAAAGAATAAATAAAATTCAAACTTTAAAGGAACACATAAGACAGTGAAAATTGTCAAAAATTCTCACCCTGTGGGAGTGACCACTATAACTTTTAAGTTGGACCATATGAAATTGCCAATATTTTACTCTTGACCTACAAAAACAGCAATTTTATATTTTATTGGCTCAGCCTAATAGTTTGGTAATATATCCTTTTAGTCTTTTTCTCTATACTTGCATACATACATGTTCTTTACTTAAAGTACATGGGAAACTAGGCATACTGCTATTGCCTATTTATTTTACTTCCCTTTTTTGCATCTCTCTGCTTCCATCTTTTAAAATGGATGCATTGTATCCTTTTGTAAGAATATGCCATAATTTAACCAGTACCCTTTCACTGAACATTTATGTTGGTCCAGTTTTTCACTCTGCACAGAACAAGTTTATATACACACTTTTTCCTCACCTTCTTTGGACTCTCATTTCACTATATGATCTGTGGTTTTTCCCCTCCATGCAGGAAATAGGGCAAAGAAGAGCACAAGCTTTGAAGTCAGACAGATCGGGATTCAAATCCTGGTTCTACCACTTAATATATAATCATGAGCAAGTTATTCATCCTTCTGAGCCTCCATTTTCTCATCTATGAATATTAGAATAATATTCTTTGTGAGATTATATTGAGAATTAATGTGTATAAGGACTATAAGGAATAATGAATCAGTATAGAGTTACAAGCTGGATGTACCAACTGGATTTAGAAATGGCAGAGGAACCAGAGATCAAATTGCCTATACCCAGATAATCACGATGTTGTGATCACTGATCTAGAGCCAGACATCCTGGAATGTGAAGTCAAGTGGGCCTTAGAAAGCATCACTACGTACAAAGCTAGTGGAGGTGATGGAATTCCAGTTGAGCTATTCCAAATCCTGAAAGATGATGCTGTGAAAGTGCTGCACTCAATATGCCAGCATATTTGGAAAACTCAGCAGTGGCCACAGGACTGGAAAAGGTCAGTTTTCATTCCAATCCCAAAGAAAGGCAATGCCAAAGAATGCTCAAACTACCGCACAATTGCACTCATCTCACACGCTAGTAAAGTAATGCTCAAAATTCTCCAAGCCAGGCTTCAGCAACACGTGAGCCATGAACTTCCTGATGTTCAAGCTGGTTTTAGAAAAGGCAGAGGAACCAGAGATCAAATTGCCAACATCCGCTGGATCATGGAAAAAGCAAGAGAGTTCCAGAAAAACATCTATTTCTGCTTTATTGACTATGCCAAAGCCTTTGACTGTGTGGATCACAATCAATTGTGGAAAATTCTGAAAGAGATGGGAATACCAGACCACCTGATCTGCCTCTTGAGAAATTTGTATGCAGGTCAGGAAGCAACAGTTAGAACTGGACATGGAACAACAGACTGGTTCCAAATAGGAAAAGGAGTTCGTCAAGGCTGTATATTGTCACCCTGTTTATTTAACTTATATGCAGAGTACATCCTAAGAAACGCTGGACTGGAAGAAACTCAAGCTGGAATCAAGATTGCCGAGAGAAATATCAGTCACCTCAGATATGCAGATGACACCATCCTTATGGCAGAAAGTGAAGAGGAACTAAAAAGCCTCCTGATGAAAGTGAAAGAGGAGAGTGAAAAAGTTGGCTTAAAGCTCAACATTCAGAAAATTAAGATCATGGCATCCGGTCCCACCACTTCATGGGAAGTAGATGGGGAAACAGTGGAAACAGTGACAGACTTTATTTTTCTGGGCTCCAAAATCACTACAGATGGTGACTGCAGCCATGAAATTAAAAGACACTTACTCCTTGGAAGGAAAGTTATGACCAACCTAGATAGCATATTCAAAAGCAGAGACATTACTTTGCCAACAAAGGTTCGTCTAGTCAAGGCTATGGTTTTTCCTGTGGTCATGTATGGATGTGAGAGTTGGACTGTGAAGAAAGCTGAGCGCAGAAGAATTGATGCTTTGGAACTGTGGTGTTGGAGAAGACTCTTGCTAGTCTCTTGGTCTTCAAGGAGATCCAACCAGTCCATTCTGAAGGAGATCAGCCCTGGGATTTCTTTGGAAGGAATGATGCTAAAGCTGAAACTCCAGTACTTTGGCCACCTCATGTGAAGAGTTGACTCATTGGAAAAGACCCTGATGCTGGGAGGGATTGGGGGCGGGAGGAGAAGGGGACGACAGAGGATGAGATGGCTGGATGGCATCACTGACTTGATGGACGTGAGTCTCAGTGAACTCTGGGAGTTGGTGATGGACAGGGAGGCCTGGCATGCTGCGATTCATGGGGTCGCAAAGAGTCGGACATGACTGAGTGACTGATCTGATCTGATGCTTCATTGACTATGTTAAAGCCTTTAACTGCATGGATCACAACAAACTGTGGTAAATTCTTCAAGAGATGGGAATAACAGACCACCTTATCTGCCGCCTGAGAAACATGTATGCAGGTCAAGAAGCAACAGTCAGAACCAGACATGGAACAGTCACCCTGCTTATTTAACTTATATGCAGAGTACATCACGTGAAATGCCAGGCAGGATGAGTCACAAGCTGGAACCAAGATTGCTTCGAGAAATATCAACAACTTCAGATATGCAGATCATACTACCATAATGGCAGAAAGCAAAGAGGAACTAAAGAGCCTCTTAATGAAGGTGAAAGAGGAGAGTGAAAAAGCTGGTTTAAAACTCAGCATTCAGAAAACTAAGATCATGGCATCTGATTCCATCATTTCATGGCAAATAGAAAGGGAAAAAAATGGAAACAGTGGCAGATTTTATTTTCTTAGGCTCTAAAATCACTATGGATGGTGACTGCAGCCATGAATTTAAAAGATGCCTGCTCCTTGGGAAGAAAAGCTATGACAAACCTAGATAGCATATTAAAAAGCAGAGACATCACTTTACCGACAGACGTCCATATAGTGAAAGCTATGTTTTTTCCAGTAGTCATGTATGGATGTGTGAGTTGGACCATAAGGAAGGCTGAGCGTGGAATTGTTGGCTTTTGAGCTGTGGTGTTGGAGAAGATTCTTGAGAGTCCCATGGACTGCAAGGAGATCCAACCAGTCAATCCTAAAGGAAATCAACCCTGAATATTCATTGGAAGGACTGATGCTGAAGCTGAAGCTCCAATACTTTGACCCTGCCTGATGCAAAGAGCTGACTCATTGGGAAAGACCCTGATGCTGGGAAGGATTGAGGGCAGAAGAAGGTGACAGAGGATGAGATGGTTGGATGGCATCATGAGTCAATGAACATGAGTTTGAGGAAAGTCTGGGAGATAGTGAAGGACATGGAAGCCTGATATGCTGCAGGTCATGGGATTGCAAAGAGTTGGAGATGACTTAGCAACTAAAAAACAGCAACACGGAGTTAGCACTTAGCAGAGAACATAGTACCTAGTAAATCTTTGGTGAATATAAGCTGCTGCTATGATTGCAATTCTTTTATTATCTTTATTTATTTACTTTTGGTTGTGCTGGGTCTTCATTGCTTTTGCATGGGCTTTTTCTAGTTGCAGCAAGTGGTGGCTACTCTTCGTTGCAGTGCACGGGCTTCTCATTGCAGTGACTTCTCTTGTGAAACACAGACTCTAGGGAGCGCGGGCTACAGGAGTTGCAGCATACAGGCTCAGCATTTGTGGTGTGCGGGCTGTAGGGCACACAGCTTCAGTTGTTGTGGCACACAGGCTTAGTTGCTCCCAGACCAGGGATCAAACCCATGTCCCCTGCATTGGCAGGTAGATTCTTATCCACTGTGCCACCAGGGAAGTCCTATAATTTTTAATATTATCATTATTCTTATTATTCAG
Seq C2 exon
ATTCATCTGCCTCCCATGGGCCTTACCCCACTACGAGGCCGGGGACTTCGAAGCCAGGAGAAACTGAGGAAATTTTCCAAACCAATATATCTCAAATCTCATGATGAAGTTTCCTAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000018559:ENSBTAT00000024700:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.053
Domain overlap (PFAM):
C1:
PF0534710=Complex1_LYR=PD(28.4=61.3)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]