BtaINT0088801 @ bosTau6
Intron Retention
Gene
ENSBTAG00000046775 | MAN1B1
Description
mannosidase, alpha, class 1B, member 1 [Source:HGNC Symbol;Acc:HGNC:6823]
Coordinates
chr11:106126804-106127632:-
Coord C1 exon
chr11:106127442-106127632
Coord A exon
chr11:106126925-106127441
Coord C2 exon
chr11:106126804-106126924
Length
517 bp
Sequences
Splice sites
5' ss Seq
GCAGTGAGG
5' ss Score
2.19
3' ss Seq
GGCCCCGCTGGTCTGCATAGGCT
3' ss Score
4.87
Exon sequences
Seq C1 exon
GAGGCTGCAGAGGAGGTGACGAGACGTGTGCATGCCCTGCACGGGAAGCTGGACGGGCTGGTGCCCATGTTCATCAACACCAACAGCGGCAGCTTCACCCACCTGGGCATGTTCACCCTGGGCGCCAGGGCCGACAGCTACTACGAGTACCTGCTGAAGCAGTGGATCCAGGGCGGGAAGAAGGAGCGGCA
Seq A exon
GTGAGGCCTGTTTCTCTGCCTTCGGGGTGGCCCCCTGGGCTCGGGGTGGCGGGGCCCTCTGTGGGGAAGGGTGTTTCTGTTCATCCTATATGCAGAGCAAGGACCGGCCACCGGGGTGAGCAGACAGGGGTCTTCCTTGGGGTTGTGGCTGCTCAGTCGTCGGCTCCGGCGGGAGGCAGCCAGGACCATGTGGGCCTCCTCACGCTTAGCACTTTGACACTGAAAACTCACACATTCCCAGGGAGCAGCCTGGTCACTCCTTGTTCAGTTATAAAAGAGATAAACCCCAGTGGGGTGCTGGGATCCTCTCAAGCCTCAAGCCTGGGGGTGACTGTGGCCCAGGAAGTGTCACTGACTGGGAGCCCGCAGGCTGGTTCAGGCTGACCCCATGGGGCTGGCAGGGCCGGGCCTCATAGATCCCAGAACGGGGACAGGAGCTCGGGGTCAGCCCTGTTTGTGGACCTGAGGGCTGTGCGCCCACCTGGCCAGAGCACACAGGCCCCGCTGGTCTGCATAG
Seq C2 exon
GCTGCTGGAAGACTACCTGGAAGCCGTGGACGGGATCAGGAAGCACCTGCTCGCCAGGTCTGAGCCCAGGAAGCTGACCTTCGTGGGGGAGCTCAACCACGGCCGCTTCAGCGCCAAGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000046775:ENSBTAT00000065627:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0153215=Glyco_hydro_47=FE(14.3=100)
A:
NA
C2:
PF0153215=Glyco_hydro_47=FE(9.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGGCTGCAGAGGAGGTGA
R:
CTGAAGCGGCCGTGGTTG
Band lengths:
302-819
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development